Specific Information of Small Protein : SPROHSA136183
General Information
| Small Protein ID | SPROHSA136183 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | MKKNNIPEPVVIEIVWSNVMSAVEWNKREEIVAEQAIKHLKQHSPLLAAFTTQSQSELTLLLKIQEYCYDNIHFMKAFRKIVVLFIKL* |
| RNA Sequence | ATGAAAAAAAACAACATCCCAGAACCAGTTGTCATCGAAATAGTCTGGTCAAATGTAATGAGCGCTGTGGAATGGAACAAAAGAGAGGAGATTGTAGCAGAGCAAGCCATCAAACACTTGAAGCAACACAGCCCTCTACTTGCTGCCTTTACTACTCAAAGTCAGTCTGAGCTGACCCTGTTACTGAAGATTCAGGAGTATTGCTATGACAACATTCATTTCATGAAAGCCTTCCGGAAAATAGTGGTGCTTTTTATAAAGCTGTAG |
| Protein Length | 88 |
| Start Codon | ATG |
| Location | chr3:172425991-172426258:- |
| Blocks | 172425991-172426258 |
| Mean PhyloCSF | -3.12735438846 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000236686; BZW1P1; |
| Mass (Da) | mono. 10318.6; avg. 10325.1 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE104033 | ENSG00000236686.1 | ENST00000454901.1 | BZW1P1 | Processed_pseudogene | Novel | 0.030025 | None | 831 | 1098 | 13 | 24.6298195 |
| GSE104033_alt | ENSG00000236686.1 | ENST00000454901.1 | BZW1P1 | Processed_pseudogene | Novel | 0.030025 | None | 831 | 1098 | 13 | 24.6298195 |
| GSE83493 | ENSG00000236686.1 | ENST00000454901.1 | BZW1P1 | Processed_pseudogene | Novel | 0.039241 | None | 831 | 1098 | 53 | 23.7886163 |
| GSE83493_alt | ENSG00000236686.1 | ENST00000454901.1 | BZW1P1 | Processed_pseudogene | Novel | 0.039241 | None | 831 | 1098 | 53 | 23.7886163 |
| Min Ribo P value | 0.030025 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE104033 | HAP-1 cells | Chronic myeloid leukemia | GSM2788007; GSM2788008 | 30143613; |
| GSE104033_alt | HAP-1 cells | Chronic myeloid leukemia | GSM2788007; GSM2788008 | 30143613; |
| GSE83493 | HeLa S3 | Cervical cancer | GSM2204389; GSM2204390; GSM2204391; GSM2204392 | 28460002; |
| GSE83493_alt | HeLa S3 | Cervical cancer | GSM2204389; GSM2204390; GSM2204391; GSM2204392 | 28460002; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
SmProt