Small Protein ID | SPROHSA136183 | ||
Organism | human (Homo sapiens) | ||
Small Protein Sequence | MKKNNIPEPVVIEIVWSNVMSAVEWNKREEIVAEQAIKHLKQHSPLLAAFTTQSQSELTLLLKIQEYCYDNIHFMKAFRKIVVLFIKL* | ||
RNA Sequence | ATGAAAAAAAACAACATCCCAGAACCAGTTGTCATCGAAATAGTCTGGTCAAATGTAATGAGCGCTGTGGAATGGAACAAAAGAGAGGAGATTGTAGCAGAGCAAGCCATCAAACACTTGAAGCAACACAGCCCTCTACTTGCTGCCTTTACTACTCAAAGTCAGTCTGAGCTGACCCTGTTACTGAAGATTCAGGAGTATTGCTATGACAACATTCATTTCATGAAAGCCTTCCGGAAAATAGTGGTGCTTTTTATAAAGCTGTAG | ||
Protein Length | 88 | ||
Start Codon | ATG | ||
Location | chr3:172425991-172426258:- | ||
Blocks | 172425991-172426258 | ||
Mean PhyloCSF | -3.12735438846 | ||
Data Source | Ribosome profiling; | ||
Related Genes | ENSG00000236686; BZW1P1; |
RiboID | GeneID | TransID | Symbol | GeneType | TISType | RiboPvalue | TISPvalue | StartOnTrans | StopOnTrans |
---|---|---|---|---|---|---|---|---|---|
GSE104033 | ENSG00000236686.1 | ENST00000454901.1 | BZW1P1 | processed_pseudogene | Novel | 0.030025 | None | 831 | 1098 |
GSE104033_alt | ENSG00000236686.1 | ENST00000454901.1 | BZW1P1 | processed_pseudogene | Novel | 0.030025 | None | 831 | 1098 |
GSE83493 | ENSG00000236686.1 | ENST00000454901.1 | BZW1P1 | processed_pseudogene | Novel | 0.039241 | None | 831 | 1098 |
GSE83493_alt | ENSG00000236686.1 | ENST00000454901.1 | BZW1P1 | processed_pseudogene | Novel | 0.039241 | None | 831 | 1098 |
Min Ribo Pvalue | 0.030025 |
Min TIS Pvalue | None |
RiboID | CellORTissue | Phenotype | RiboSource | PMID |
---|---|---|---|---|
GSE104033 | HAP-1 cells | chronic myeloid leukemia | GSM2788007;GSM2788008 | 30143613; |
GSE104033_alt | HAP-1 cells | chronic myeloid leukemia | GSM2788007;GSM2788008 | 30143613; |
GSE83493 | HeLa S3 | cervical cancer | GSM2204389;GSM2204390;GSM2204391;GSM2204392 | 28460002; |
GSE83493_alt | HeLa S3 | cervical cancer | GSM2204389;GSM2204390;GSM2204391;GSM2204392 | 28460002; |
No results |
No results |
No results |
Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
---|---|---|---|---|---|---|---|---|---|---|
No results |
Disease | Detected | |
---|---|---|
No results |
VarID | Consequence To sORF | rsID | RiboID |
---|---|---|---|
No results |
ID | Small Protein Length | Start Codon | Strand | Blocks |
---|---|---|---|---|
SPROHSA231301 | 25 | ATT | - | 172425991-172426069 |
SPROHSA13760 | 26 | AAG | - | 172425991-172426072 |
SPROHSA152968 | 69 | ATG | - | 172425991-172426201 |
SPROHSA28765 | 91 | AAG | - | 172425991-172426267 |
PMID | 28460002 |
Title | Proteomic analysis of polyribosomes identifies splicing factors as potential regulators of translation during mitosis |
Journal | Nucleic Acids Res.2017 Jun 2;45(10):5945-5957.doi: 10.1093/nar/gkx326. |
Authors | Ranen Aviner,Sarah Hofmann,Tamar Elman,Anjana Shenoy,Tamar Geiger,Ran Elkon,Marcelo Ehrlich,Orna Elroy-Stein |
PMID | 30143613 |
Title | The dual methyltransferase METTL13 targets N terminus and Lys55 of eEF1A and modulates codon-specific translation rates |
Journal | Nat Commun.2018 Aug 24;9(1):3411.doi: 10.1038/s41467-018-05646-y. |
Authors | Magnus E Jakobsson,Jędrzej M Małecki,Levon Halabelian,Benedikt S Nilges,Rita Pinto,Srikanth Kudithipudi,Stephanie Munk,Erna Davydova,Fawzi R Zuhairi,Cheryl H Arrowsmith,Albert Jeltsch,Sebastian A Leidel,Jesper V Olsen,Pål Ø Falnes |