| General Information |
| Family ID | 52 |
| No. Members | 58 |
| Small Protein Length | 50 |
| Representative AA Seq (detail) | MIKTIAKPAERKVTGCGECRSTCQSACKTSCTVGNQSCERITREEKIERK |
| Representative DNA Seq (detail) | ATGATTAAGACGATTGCGAAACCTGCCGAGAGAAAAGTGACGGGATGCGGCGAATGCAGAAGCACCTGCCAGTCCGCTTGCAAAACCAGCTGTACGGTGGGAAATCAGTCCTGCGAAAGAATCACGCGCGAAGAGAAAATCGAACGCAAGTAA |
| Example of a Refseq homolog | WP_072867533.1 |
| Associated HGT genes | NA |
| Number of non bacterial | 0 |
| Non bacterial classification_numbe of members that were classified to it | NA |
| RNA code p-value assigned to family | 2.31E-09 |
| number of species | 16 |
| Species | Catabacter sp. UBA7597_3, Ruminococcaceae bacterium P7_3, Firmicutes bacterium CAG:102_1, Lachnospiraceae bacterium AB2028_2, Unclassified_18, Clostridiales bacterium UBA1774_2, Gemmiger formicilis_1, Oscillospiraceae bacterium UBA6370_1, Stenotrophomonas sp. SKA14_9, Clostridium sp. CAG:349_1, Alistipes putredinis_1, Selenomonas sp. AE3005_8, Alistipes obesi_1, Lachnospiraceae bacterium UBA7143_1, Clostridium sp. CAG:632_1, Clostridiales bacterium UBA1752_1, Desulfuromonadales bacterium C00003107_1 |
| Sample Origin |
| Body Sites | No. Samples | Fraction |
| Mouth | 0 | 0 |
| Skin | 0 | 0 |
| Vagina | 0 | 0 |
| Gut | 41 | 0.165991903 |
| Number of homologs from non-human metagenomes | Number of different types of non-human environments | Non human environments in which homologs exist_number of homologs |
| 9 | 1 | Mammals_9 |
| Function prediction |
| % of family members that are predicted to have a transmembrane domain (TMHMM) | 0 | ||
| Is family classified as Transmembrane (TMHMM) | 0 | ||
| % of family members that are predicted to have a signal peptide in gram+ (SignalP_v5.0) | 0 | ||
| Is family predicted to be secreted in gram+ (SignalP_v5.0) | 0 | ||
| % of family members that are predicted to have a signal peptide in gram- (SignalP_v5.0) | 0 | ||
| Is family predicted to be secreted in gram- (SignalP_v5.0) | 0 | ||
| Number of members the are transmembrane (Phobius) | 0 | ||
| Fraction of members that are transmembrane (Phobius) | 0 | ||
| Number of members that are secreted (Phobius) | 0 | ||
| Fraction of members that are secreted (Phobius) | 0 | ||
| Number of significant complete CDD hits that were assigned to family representative sequence | 2 | ||
| PSSMs assigned | 315759, 274891 | ||
| Domains assigned | SCIFF, six_Cys_in_45 | ||
| References |
| PubMed ID | 31402174 |
| Title | Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes |
| Authors | Hila Sberro, Brayon J. Fremin, Soumaya Zlitni, Fredrik Edfors, Nicholas Greenfield, Michael P. Snyder, Georgios A. Pavlopoulos, Nikos C. Kyrpides, and Ami S. Bhatt |
| Journal | Cell 178, 1–15, August 22, 2019 |