Detail Information of small proteins related to Human Microbiomes for Family ID: 46
General Information
Family ID46
No. Members604
Small Protein Length50
Example of a Refseq homologWP_022222269.1
Associated HGT genesTn916-Xis, SR_IS607_transposase_like, INT_C_like_4, INT_ICEBs1_C_like, Recombinase, INT_P4_C, recomb_XerD, SR_TndX_transposase, Zn_ribbon_recom, INT_RitA_C_like, INT_Lambda_C, RecA-like_NTPases, recomb_XerC, DNA_BRE_C, XerC, xerC, INT_RitC_C_like, INT_C_like_5, SR_ResInv, INT_C_like_3, XerD, INT_Cre_C, INT_XerDC_C, INT_FimBE_like, Integrase_DNA, INT_Rci_Hp1_C, PinE, INT_IntI_C, INT_C_like_1, Phage_integrase, INT_RitB_C_like, Ser_Recombinase, Phage_int_SAM_3, INTN1_C_like
Number of non bacterial 0
Non bacterial classification_numbe of members that were classified to itNA
RNA code p-value assigned to family1.17E-08
number of species22
SpeciesAcetobacter sp. 46_36_1, Faecalibacterium prausnitzii_1, Subdoligranulum sp. 60_17_1, Clostridiales bacterium 52_15_1, Unclassified_21, Firmicutes bacterium CAG:129_19, Faecalibacterium sp. UBA2087_1, Oscillibacter sp. ER4_307, Clostridiales bacterium UBA7739_1, Firmicutes bacterium CAG:24_1, Oscillospiraceae bacterium UBA4632_16, Ruminococcus sp. CAG:177_1, Firmicutes bacterium CAG:129_59_24_208, Oscillibacter sp. 57_20_1, Clostridium sp. ATCC BAA-442_1, Firmicutes bacterium CAG:124_2, Clostridiales bacterium 59_14_1, Firmicutes bacterium CAG:176_63_11_2, Firmicutes bacterium UBA6418_1, Ruminococcus sp. CAG:108-related_41_35_1, Sutterella wadsworthensis_1, Clostridium sp. CAG:138_2, Lachnospiraceae bacterium 7_1_58FAA_1

Sample Origin
Body SitesNo. SamplesFraction
Number of homologs from non-human metagenomesNumber of different types of non-human environmentsNon human environments in which homologs exist_number of homologs

Function prediction
% of family members that are predicted to have a transmembrane domain (TMHMM)0
Is family classified as Transmembrane (TMHMM)0
% of family members that are predicted to have a signal peptide in gram+ (SignalP_v5.0)0
Is family predicted to be secreted in gram+ (SignalP_v5.0)0
% of family members that are predicted to have a signal peptide in gram- (SignalP_v5.0)0
Is family predicted to be secreted in gram- (SignalP_v5.0)0
Number of members the are transmembrane (Phobius)0
Fraction of members that are transmembrane (Phobius)0
Number of members that are secreted (Phobius)0
Fraction of members that are secreted (Phobius)0
Number of significant complete CDD hits that were assigned to family representative sequence0
PSSMs assignedNA
Domains assignedNA

PubMed ID31402174
TitleLarge-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes
AuthorsHila Sberro, Brayon J. Fremin, Soumaya Zlitni, Fredrik Edfors, Nicholas Greenfield, Michael P. Snyder, Georgios A. Pavlopoulos, Nikos C. Kyrpides, and Ami S. Bhatt
JournalCell 178, 1–15, August 22, 2019