| General Information |
| Family ID | 40 |
| No. Members | 393 |
| Small Protein Length | 50 |
| Representative AA Seq (detail) | MEEKIYKIMRGAGALNIVLGVISLVVGIAAGVLLIISGGKLISGKSRILF |
| Representative DNA Seq (detail) | ATGGAAGAGAAAATCTATAAGATCATGCGCGGAGCGGGTGCTCTGAATATTGTATTGGGAGTGATCTCCCTGGTAGTCGGAATTGCGGCAGGAGTACTGCTGATCATCAGCGGCGGCAAGCTTATCTCCGGCAAATCCCGCATCCTGTTCTGA |
| Example of a Refseq homolog | WP_034557868.1 |
| Associated HGT genes | INT_C_like_4, INT_ICEBs1_C_like, Recombinase, PRK09870, Rad51_DMC1_radA, SR_TndX_transposase, XerD, PrfA, INT_XerDC_C, INT_RitA_C_like, INT_FimBE_like, PinE, INT_Rci_Hp1_C, INT_IntI_C, RecA-like_NTPases, INT_C_like_1, Phage_integrase, integrase_gron, INT_RitB_C_like, Ser_Recombinase, DNA_BRE_C, Phage_int_SAM_3, INTN1_C_like, INT_RitC_C_like |
| Number of non bacterial | 0 |
| Non bacterial classification_numbe of members that were classified to it | NA |
| RNA code p-value assigned to family | 0 |
| number of species | 42 |
| Species | Clostridium sp. CAG:167_1, [Clostridium] symbiosum_1, Clostridium sp. ASF502_1, Butyrivibrio sp. VCD2006_1, Blautia sp. CAG:52_1, Firmicutes bacterium CAG:65_45_313_29, Roseburia sp. CAG:10041_57_1, Oribacterium asaccharolyticum_1, Ruminococcus sp. CAG:379_1, Clostridium sp. CAG:75_41, Lachnospiraceae bacterium TF01-11_1, Ruminococcus lactaris_1, Fusicatenibacter sp. 2789STDY5834925_4, Clostridium sp. CAG:43_25, Firmicutes bacterium CAG:194_4, Clostridiales bacterium VE202-27_6, Lachnospiraceae bacterium UBA7027_1, Ruminococcus sp. Marseille-P328_1, Clostridium hathewayi CAG:224_1, Clostridium sp. SY8519_1, Coprococcus sp. CAG:131-related_45_246_1, Firmicutes bacterium CAG:24_1, Butyrivibrio sp. XPD2006_1, Dorea sp. CAG:317_4, Dorea longicatena_1, Lachnospiraceae bacterium NLAE-zl-G231_1, Clostridium sp. CAG:91_185, Marvinbryantia formatexigens_1, Firmicutes bacterium CAG_194_44_15_9, Lachnospiraceae bacterium 6_1_37FAA_1, Hungatella hathewayi_1, Unclassified_11, Bacteroides sp. 14(A)_1, Coprococcus eutactus_1, Eubacterium sp. CAG:38_1, Clostridium sp. 42_12_6, Eisenbergiella tayi_1, Lachnospiraceae bacterium UBA5895_1, Ruminococcus sp. UBA7013_2, Roseburia intestinalis_1, uncultured Butyricicoccus sp._1, Lachnospiraceae bacterium UBA1689_1, Firmicutes bacterium CAG:65_26 |
| Sample Origin |
| Body Sites | No. Samples | Fraction |
| Mouth | 22 | 0.099547511 |
| Skin | 0 | 0 |
| Vagina | 0 | 0 |
| Gut | 156 | 0.631578947 |
| Number of homologs from non-human metagenomes | Number of different types of non-human environments | Non human environments in which homologs exist_number of homologs |
| 22 | 4 | Mammals_19, Fungi_1, Aquatic_1, Bioreactor_1 |
| Function prediction |
| % of family members that are predicted to have a transmembrane domain (TMHMM) | 1 | ||
| Is family classified as Transmembrane (TMHMM) | 1 | ||
| % of family members that are predicted to have a signal peptide in gram+ (SignalP_v5.0) | 0 | ||
| Is family predicted to be secreted in gram+ (SignalP_v5.0) | 0 | ||
| % of family members that are predicted to have a signal peptide in gram- (SignalP_v5.0) | 0 | ||
| Is family predicted to be secreted in gram- (SignalP_v5.0) | 0 | ||
| Number of members the are transmembrane (Phobius) | 393 | ||
| Fraction of members that are transmembrane (Phobius) | 1 | ||
| Number of members that are secreted (Phobius) | 0 | ||
| Fraction of members that are secreted (Phobius) | 0 | ||
| Number of significant complete CDD hits that were assigned to family representative sequence | 0 | ||
| PSSMs assigned | NA | ||
| Domains assigned | NA | ||
| References |
| PubMed ID | 31402174 |
| Title | Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes |
| Authors | Hila Sberro, Brayon J. Fremin, Soumaya Zlitni, Fredrik Edfors, Nicholas Greenfield, Michael P. Snyder, Georgios A. Pavlopoulos, Nikos C. Kyrpides, and Ami S. Bhatt |
| Journal | Cell 178, 1–15, August 22, 2019 |