Detail Information of small proteins related to Human Microbiomes for Family ID: 40
General Information
Family ID40
No. Members393
Small Protein Length50
Representative AA Seq (detail) MEEKIYKIMRGAGALNIVLGVISLVVGIAAGVLLIISGGKLISGKSRILF
Representative DNA Seq (detail) ATGGAAGAGAAAATCTATAAGATCATGCGCGGAGCGGGTGCTCTGAATATTGTATTGGGAGTGATCTCCCTGGTAGTCGGAATTGCGGCAGGAGTACTGCTGATCATCAGCGGCGGCAAGCTTATCTCCGGCAAATCCCGCATCCTGTTCTGA
Example of a Refseq homologWP_034557868.1
Associated HGT genesINT_C_like_4, INT_ICEBs1_C_like, Recombinase, PRK09870, Rad51_DMC1_radA, SR_TndX_transposase, XerD, PrfA, INT_XerDC_C, INT_RitA_C_like, INT_FimBE_like, PinE, INT_Rci_Hp1_C, INT_IntI_C, RecA-like_NTPases, INT_C_like_1, Phage_integrase, integrase_gron, INT_RitB_C_like, Ser_Recombinase, DNA_BRE_C, Phage_int_SAM_3, INTN1_C_like, INT_RitC_C_like
Number of non bacterial 0
Non bacterial classification_numbe of members that were classified to itNA
RNA code p-value assigned to family0
number of species42
SpeciesClostridium sp. CAG:167_1, [Clostridium] symbiosum_1, Clostridium sp. ASF502_1, Butyrivibrio sp. VCD2006_1, Blautia sp. CAG:52_1, Firmicutes bacterium CAG:65_45_313_29, Roseburia sp. CAG:10041_57_1, Oribacterium asaccharolyticum_1, Ruminococcus sp. CAG:379_1, Clostridium sp. CAG:75_41, Lachnospiraceae bacterium TF01-11_1, Ruminococcus lactaris_1, Fusicatenibacter sp. 2789STDY5834925_4, Clostridium sp. CAG:43_25, Firmicutes bacterium CAG:194_4, Clostridiales bacterium VE202-27_6, Lachnospiraceae bacterium UBA7027_1, Ruminococcus sp. Marseille-P328_1, Clostridium hathewayi CAG:224_1, Clostridium sp. SY8519_1, Coprococcus sp. CAG:131-related_45_246_1, Firmicutes bacterium CAG:24_1, Butyrivibrio sp. XPD2006_1, Dorea sp. CAG:317_4, Dorea longicatena_1, Lachnospiraceae bacterium NLAE-zl-G231_1, Clostridium sp. CAG:91_185, Marvinbryantia formatexigens_1, Firmicutes bacterium CAG_194_44_15_9, Lachnospiraceae bacterium 6_1_37FAA_1, Hungatella hathewayi_1, Unclassified_11, Bacteroides sp. 14(A)_1, Coprococcus eutactus_1, Eubacterium sp. CAG:38_1, Clostridium sp. 42_12_6, Eisenbergiella tayi_1, Lachnospiraceae bacterium UBA5895_1, Ruminococcus sp. UBA7013_2, Roseburia intestinalis_1, uncultured Butyricicoccus sp._1, Lachnospiraceae bacterium UBA1689_1, Firmicutes bacterium CAG:65_26

Sample Origin
Body SitesNo. SamplesFraction
Mouth220.099547511
Skin00
Vagina00
Gut1560.631578947
Number of homologs from non-human metagenomesNumber of different types of non-human environmentsNon human environments in which homologs exist_number of homologs
224Mammals_19, Fungi_1, Aquatic_1, Bioreactor_1

Function prediction
% of family members that are predicted to have a transmembrane domain (TMHMM)1
Is family classified as Transmembrane (TMHMM)1
% of family members that are predicted to have a signal peptide in gram+ (SignalP_v5.0)0
Is family predicted to be secreted in gram+ (SignalP_v5.0)0
% of family members that are predicted to have a signal peptide in gram- (SignalP_v5.0)0
Is family predicted to be secreted in gram- (SignalP_v5.0)0
Number of members the are transmembrane (Phobius)393
Fraction of members that are transmembrane (Phobius)1
Number of members that are secreted (Phobius)0
Fraction of members that are secreted (Phobius)0
Number of significant complete CDD hits that were assigned to family representative sequence0
PSSMs assignedNA
Domains assignedNA

References
PubMed ID31402174
TitleLarge-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes
AuthorsHila Sberro, Brayon J. Fremin, Soumaya Zlitni, Fredrik Edfors, Nicholas Greenfield, Michael P. Snyder, Georgios A. Pavlopoulos, Nikos C. Kyrpides, and Ami S. Bhatt
JournalCell 178, 1–15, August 22, 2019