Detail Information of small proteins related to Human Microbiomes for Family ID: 31
General Information
Family ID31
No. Members134
Small Protein Length50
Example of a Refseq homologNA
Associated HGT genesSR_ResInv, SR_IS607_transposase_like, zf-IS66, INT_ICEBs1_C_like, PRK09409, Recombinase, SR_TndX_transposase, INT_XerDC_C, INT_RitA_C_like, Zn_ribbon_recom, DEDD_Tnp_IS110, PinE, INT_Rci_Hp1_C, INT_IntI_C, DDE_Tnp_1, LZ_Tnp_IS66, INT_C_like_1, PHA02517, Phage_integrase, DNA_BRE_C, Ser_Recombinase, INTN1_C_like, Transposase_20
Number of non bacterial 0
Non bacterial classification_numbe of members that were classified to itNA
RNA code p-value assigned to family0.000445
number of species13
SpeciesIntestinimonas butyriciproducens_3, Pseudoflavonifractor capillosus_1, Lachnospiraceae bacterium 7_1_58FAA_3, Firmicutes bacterium CAG:176_1, Clostridia bacterium UC5.1-2H11_3, uncultured Oscillibacter sp._2, Oscillibacter sp. CAG:241_2, Clostridium sp. ATCC BAA-442_1, Oscillibacter sp. ER4_1, Anaerofilum sp. An201_1, Ruminococcaceae bacterium 668_1, Unclassified_3, Clostridiales bacterium 42_27_33, Flavonifractor plautii_12

Sample Origin
Body SitesNo. SamplesFraction
Number of homologs from non-human metagenomesNumber of different types of non-human environmentsNon human environments in which homologs exist_number of homologs

Function prediction
% of family members that are predicted to have a transmembrane domain (TMHMM)0
Is family classified as Transmembrane (TMHMM)0
% of family members that are predicted to have a signal peptide in gram+ (SignalP_v5.0)0
Is family predicted to be secreted in gram+ (SignalP_v5.0)0
% of family members that are predicted to have a signal peptide in gram- (SignalP_v5.0)0
Is family predicted to be secreted in gram- (SignalP_v5.0)0
Number of members the are transmembrane (Phobius)0
Fraction of members that are transmembrane (Phobius)0
Number of members that are secreted (Phobius)5
Fraction of members that are secreted (Phobius)0.037313433
Number of significant complete CDD hits that were assigned to family representative sequence0
PSSMs assignedNA
Domains assignedNA

PubMed ID31402174
TitleLarge-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes
AuthorsHila Sberro, Brayon J. Fremin, Soumaya Zlitni, Fredrik Edfors, Nicholas Greenfield, Michael P. Snyder, Georgios A. Pavlopoulos, Nikos C. Kyrpides, and Ami S. Bhatt
JournalCell 178, 1–15, August 22, 2019