Detail Information of small proteins related to Human Microbiomes for Family ID: 26
General Information
Family ID26
No. Members3099
Small Protein Length50
Example of a Refseq homologWP_006260302.1
Associated HGT genesHTH_MerR-trunc, INT_C_like_4, Y1_Tnp, PRK09871, INT_ICEBs1_C_like, INT_P4_C, recomb_XerD, PRK09870, Rad51_DMC1_radA, Phage_int_SAM_4, INT_StrepXerD_C_like, INT_RitA_C_like, INT_Lambda_C, RecA-like_NTPases, PHA02517, recomb_XerC, RAYT, DNA_BRE_C, XerC, recA, INT_C_like_2, xerC, Phage_int_SAM_1, Transposase_20, INT_RitC_C_like, SR_ResInv, INT_C_like_5, INT_C_like_3, RecA, XerD, INT_Cre_C, xerD, INT_XerDC_C, xerS, DDE_Tnp_1_assoc, DEDD_Tnp_IS110, INT_FimBE_like, PinE, INT_Rci_Hp1_C, INT_IntI_C, DDE_Tnp_IS1595, DDE_Tnp_1, INT_C_like_1, PRK15417, Phage_integrase, integrase_gron, INT_RitB_C_like, Ser_Recombinase, Phage_int_SAM_5, INTN1_C_like, Zn_Tnp_IS1595
Number of non bacterial 0
Non bacterial classification_numbe of members that were classified to itNA
RNA code p-value assigned to family0
number of species182
SpeciesBacteroidales bacterium UBA1229_1, Bacteroides sp. Marseille-P2653_1, Parabacteroides distasonis_80, Parabacteroides sp. D26_11, Leptotrichia sp. oral taxon 498_1, Capnocytophaga sp. oral taxon 863_6, Parabacteroides sp. CAG:409_1, Bacteroides caccae_5, Bacteroidetes oral taxon 274_97, Bacteroides sp. CAG:462_3, Bacteroides massiliensis_1, Porphyromonas catoniae_327, Capnocytophaga sp. oral taxon 380_1, uncultured Bacteroides sp._4, Tannerella sp. oral taxon HOT-286_3, Porphyromonas crevioricanis_1, Parabacteroides goldsteinii_7, Parabacteroides sp. merdae-related_45_40_6, Bacteroidales bacterium 55_9_1, Prevotellaceae bacterium UBA1746_9, Barnesiella sp. An22_3, Prevotella sp. CAG:474_2, Bacteroides ovatus_4, Porphyromonadaceae bacterium UBA7087_6, Bacteroidales bacterium 43_36_1, Prevotella sp. ICM33_1, Capnocytophaga gingivalis_148, Bacteroides sartorii_1, Bacteroides sp. CAG:144_7, Prevotella sp. CAG:279_1, Parabacteroides sp. UBA3278_1, Odoribacter splanchnicus_140, Flavobacterium chungangense_8, Bacteroidales bacterium H8_17, Parvimonas sp. oral taxon 393_1, Bacteroides dorei_3, Odoribacter sp. 43_10_5, Porphyromonas cangingivalis_1, Capnocytophaga sp. oral taxon 338_4, Paraprevotella xylaniphila_1, Prevotella sp. HMSC073D09_1, Capnocytophaga stomatis_1, Porphyromonadaceae bacterium UBA7073_1, Parabacteroides sp. D13_7, Porphyromonadaceae bacterium UBA7475_2, Faecalibacterium sp. CAG:74_1, Bacteroidales bacterium H9_3, Pseudopropionibacterium propionicum_1, Bacteroides uniformis_4, Capnocytophaga haemolytica_1, Odoribacter sp. UNK.MGS-12_19, Chryseobacterium sp. RU37D_2, Prevotella melaninogenica_2, Prevotella saccharolytica_1, Chryseobacterium formosense_3, Unclassified_1, Bacteroides sp. CAG:927_8, Porphyromonadaceae bacterium UBA7483_2, Fusobacterium periodonticum_4, Aquimarina agarilytica_8, Bacteroidales bacterium H2_1, Porphyromonas sp. 31_2_59, Bacteroidales bacterium M2_1, Bacteroidales bacterium H7_3, Butyricimonas synergistica_26, Butyricimonas virosa_39, Leptotrichia sp. oral taxon 212_1, Odoribacter laneus CAG:561_1, Porphyromonadaceae bacterium UBA3677_1, Capnocytophaga sp. ChDC OS43_40, Butyricimonas sp. Marseille-P3923_3, Haemophilus parainfluenzae_1, Capnocytophaga sp. oral taxon 412_2, Gemella haemolysans_1, Bacteroidales bacterium H5_1, Bacteroides sp. An269_1, Porphyromonas sp. oral taxon 279_279, Bacteroides sp. 3_1_13_2, Coprobacter sp. 177_7, Bacteroides cellulosilyticus_1, Capnocytophaga granulosa_10, Porphyromonadaceae bacterium UBA3400_2, Porphyromonas sp. KLE 1280_282, Porphyromonadaceae bacterium UBA7132_1, Prevotella sp. UBA634_1, Elizabethkingia meningoseptica_2, Bacteroidales bacterium M12_1, Parabacteroides sp. CAG:2_2, Tannerella sp. CAG:118_3, Alistipes obesi_5, Chryseobacterium piperi_4, Bacteroides sp. UNK.MGS-14_22, Bacteroides stercoris_5, Alistipes timonensis_1, Capnocytophaga sp. oral taxon 329_12, Parabacteroides sp. Marseille-P3668_2, Chryseobacterium sp. T16E-39_1, Capnocytophaga leadbetteri_38, Bacteroidales bacterium M6_6, Chryseobacterium sp. OV259_22, Capnocytophaga sp. oral taxon 335_1, Chryseobacterium takakiae_1, Campylobacter concisus_1, Prevotellaceae bacterium UBA4300_1, Capnocytophaga sp. oral taxon 336_1, Barnesiella intestinihominis_18, Parabacteroides sp. D25_32, Bacteroides fragilis_1, Bacteroides sp. UBA7156_1, Bacteroides sp. N54.MGS-20_6, Capnocytophaga sp. CM59_37, Tannerella sp. 6_1_58FAA_CT1_14, Prevotella sp. oral taxon 472_1, Capnocytophaga sp. oral taxon 326_35, Flavobacteriales bacterium UBA1820_4, Bacteroides thetaiotaomicron CAG:40_1, Bacteroides gallinarum_1, Prevotellamassilia timonensis_1, Capnocytophaga sputigena_51, Odoribacter splanchnicus CAG:14_8, Actinomyces viscosus_1, Parabacteroides sp. SN4_8, Streptococcus sp. 263_SSPC_1, Bacteroides sp. 9_1_42FAA_1, Chryseobacterium sp. Leaf404_5, Bacteroidales bacterium H3_8, Bacteroides sp. 1_1_14_2, Prevotella oris_1, Coprobacter fastidiosus_14, Alistipes sp. An31A_1, Porphyromonas uenonis_4, Prevotella nigrescens_2, Parabacteroides johnsonii_17, Prevotella maculosa_1, Flavobacteriales bacterium UBA972_1, Bacteroidales bacterium UBA1205_2, Alistipes finegoldii_1, Capnocytophaga sp. oral taxon 332_8, Bacteroides nordii_1, Riemerella columbipharyngis_147, Prevotella sp. CAG:604_1, Bacteroides sp. CAG:20_120, Porphyromonas sp. COT-239 OH1446_1, Bacteroidales bacterium M1_1, Prevotella sp. oral taxon 317_1, Odoribacter laneus_17, Chryseobacterium sp. YR477_1, Butyricimonas sp. An62_25, Parabacteroides timonensis_1, Chryseobacterium molle_1, Parabacteroides merdae_214, Odoribacter sp. N54.MGS-14_4, Prevotella bivia_3, Flavobacterium fontis_3, Alistipes putredinis_4, Bacteroides uniformis CAG:3_1, Porphyromonadaceae bacterium UBA7194_1, Parabacteroides sp. AT13_24, Bacteroides salyersiae_1, Bacteroidales bacterium M7_1, Bacteroides sp. 2_1_33B_1, Bacteroides timonensis_1, Bacteroides vulgatus_14, Atopobium sp. ICM42b_1, Bacteroides sp. UBA939_1, Porphyromonadaceae bacterium UBA7572_1, Bacteroides sp. 43_46_2, Capnocytophaga ochracea_7, Bacteroides intestinalis_1, Porphyromonas gingivalis_2, Bacteroides thetaiotaomicron_1, Odoribacter sp. N15.MGS-14_2, Bacteroidales bacterium UBA4116_1, Chryseobacterium sp. 6021061333_7, Porphyromonadaceae bacterium UBA7173_1, Capnocytophaga sp. oral taxon 324_1, Chryseobacterium taihuense_12, Bacteroides sp. CAG:98_2, Bacteroides sp. AR29_1, Veillonella dispar_1, Gemella sanguinis_2, Porphyromonas asaccharolytica_1, Leptotrichia sp. oral taxon 215_2

Sample Origin
Body SitesNo. SamplesFraction
Number of homologs from non-human metagenomesNumber of different types of non-human environmentsNon human environments in which homologs exist_number of homologs
11912Terrestrial_3, Biotransformation_4, Birds_3, Mammals_29, Bioremediation_3, Wastewater_17, Cnidaria_1, Plants_2, Arthropoda_12, Algae_3, Bioreactor_13, Aquatic_17

Function prediction
% of family members that are predicted to have a transmembrane domain (TMHMM)0
Is family classified as Transmembrane (TMHMM)0
% of family members that are predicted to have a signal peptide in gram+ (SignalP_v5.0)0
Is family predicted to be secreted in gram+ (SignalP_v5.0)0
% of family members that are predicted to have a signal peptide in gram- (SignalP_v5.0)0
Is family predicted to be secreted in gram- (SignalP_v5.0)0
Number of members the are transmembrane (Phobius)0
Fraction of members that are transmembrane (Phobius)0
Number of members that are secreted (Phobius)0
Fraction of members that are secreted (Phobius)0
Number of significant complete CDD hits that were assigned to family representative sequence1
PSSMs assigned316638
Domains assignedDUF4295

PubMed ID31402174
TitleLarge-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes
AuthorsHila Sberro, Brayon J. Fremin, Soumaya Zlitni, Fredrik Edfors, Nicholas Greenfield, Michael P. Snyder, Georgios A. Pavlopoulos, Nikos C. Kyrpides, and Ami S. Bhatt
JournalCell 178, 1–15, August 22, 2019