Detail Information of small proteins related to Human Microbiomes for Family ID: 19
General Information
Family ID19
No. Members784
Small Protein Length50
Example of a Refseq homologWP_004843492.1
Associated HGT genesINT_C_like_5, HTH_MerR-trunc, zf-IS66, RecA, INT_ICEBs1_C_like, recomb_XerD, INT_P4_C, Rad51_DMC1_radA, PRK09870, XerD, INT_XerDC_C, INT_RitA_C_like, DEDD_Tnp_IS110, INT_FimBE_like, Integrase_DNA, INT_Rci_Hp1_C, INT_IntI_C, RecA-like_NTPases, LZ_Tnp_IS66, INT_C_like_1, recomb_XerC, Phage_integrase, INT_RitB_C_like, XerC, Phage_int_SAM_3, DNA_BRE_C, xerC, INTN1_C_like, Transposase_20, INT_RitC_C_like
Number of non bacterial 0
Non bacterial classification_numbe of members that were classified to itNA
RNA code p-value assigned to family0
number of species54
SpeciesRoseburia intestinalis_96, Blautia sp. CAG:257_4, Bacteroides ovatus_1, Roseburia sp. CAG:18_43_25_28, Clostridiales bacterium 42_27_1, Roseburia sp. CAG:182_5, Roseburia sp. 40_7_1, Azospirillum sp. 51_20_1, Roseburia inulinivorans CAG:15_6, Ruminococcus sp. CAG:9_1, Eubacterium sp. 38_16_1, Ruminococcus bicirculans_1, Dorea sp. 42_8_1, Butyrivibrio sp. CAG:318_1, Clostridium sp. CAG:264_1, Unclassified_8, Clostridium sp. CAG:81_1, Dorea longicatena_11, butyrate-producing bacterium SS3/4_13, Firmicutes bacterium CAG:56_42, Ruminococcus sp. CAG:60_1, Roseburia sp. CAG:18_24, Faecalibacterium sp. UBA2087_1, Ruminococcus obeum CAG:39_1, Merdimonas faecis_3, Roseburia inulinivorans_112, Ruminococcus sp. 5_1_39BFAA_3, Firmicutes bacterium CAG:24_122, Coprococcus catus_1, Roseburia intestinalis CAG:13_8, Blautia sp. Marseille-P3087_2, Roseburia sp. CAG:197_2, Blautia sp. UBA2945_3, Ruminococcus sp. Marseille-P328_19, Firmicutes bacterium CAG:227_1, Clostridium sp. Marseille-P3244_1, Roseburia faecis_59, Eubacterium sp. CAG:146_1, Parabacteroides merdae_1, Blautia wexlerae_23, Clostridium sp. CAG:58_4, Ruminococcus lactaris_1, Dorea formicigenerans_1, [Eubacterium] hallii_10, Blautia sp. Marseille-P2398_4, Ruminococcus sp. CAG:108_1, Roseburia hominis_31, Dorea longicatena CAG:42_9, Blautia sp. CAG:237_9, Roseburia sp. CAG:197_41_10_2, Firmicutes bacterium CAG:424_1, Roseburia sp. CAG:471_1, Eubacterium hallii CAG:12_2, Firmicutes bacterium CAG:95_19, Clostridiales bacterium Nov_37_41_4

Sample Origin
Body SitesNo. SamplesFraction
Number of homologs from non-human metagenomesNumber of different types of non-human environmentsNon human environments in which homologs exist_number of homologs
204Mammals_17, Fungi_1, Bioreactor_1, Aquatic_1

Function prediction
% of family members that are predicted to have a transmembrane domain (TMHMM)1
Is family classified as Transmembrane (TMHMM)1
% of family members that are predicted to have a signal peptide in gram+ (SignalP_v5.0)0.024234694
Is family predicted to be secreted in gram+ (SignalP_v5.0)0
% of family members that are predicted to have a signal peptide in gram- (SignalP_v5.0)0
Is family predicted to be secreted in gram- (SignalP_v5.0)0
Number of members the are transmembrane (Phobius)784
Fraction of members that are transmembrane (Phobius)1
Number of members that are secreted (Phobius)0
Fraction of members that are secreted (Phobius)0
Number of significant complete CDD hits that were assigned to family representative sequence0
PSSMs assignedNA
Domains assignedNA

PubMed ID31402174
TitleLarge-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes
AuthorsHila Sberro, Brayon J. Fremin, Soumaya Zlitni, Fredrik Edfors, Nicholas Greenfield, Michael P. Snyder, Georgios A. Pavlopoulos, Nikos C. Kyrpides, and Ami S. Bhatt
JournalCell 178, 1–15, August 22, 2019