Detail Information of small proteins related to Human Microbiomes for Family ID: 13
General Information
Family ID13
No. Members106
Small Protein Length50
Representative AA Seq (detail) MYILIKAKLASMFELKEYYTLDEALKLYALYRMDMDIQNGKAEEMRERRE
Representative DNA Seq (detail) ATGTACATACTGATTAAAGCTAAATTAGCTTCAATGTTTGAGTTGAAGGAATATTACACCTTAGACGAGGCATTGAAGCTATATGCTTTATATCGTATGGATATGGATATTCAGAATGGAAAGGCTGAGGAAATGAGAGAAAGGAGGGAATAG
Example of a Refseq homologWP_003502280.1
Associated HGT genesZn_ribbon_recom, SR_ResInv, Recombinase, SR_IS607_transposase_like, PinE, Ser_Recombinase, SR_TndX_transposase
Number of non bacterial 0
Non bacterial classification_numbe of members that were classified to itNA
RNA code p-value assigned to family5.36E-12
number of species9
SpeciesJanibacter sp. HTCC2649_1, Unclassified_55, Faecalibacterium prausnitzii_2, Clostridiales bacterium 42_27_14, uncultured Faecalibacterium sp._1, [Clostridium] symbiosum_8, Clostridium sp. CAG:277_4, Fusicatenibacter saccharivorans_15, Firmicutes bacterium CAG:24_1, Ruminococcus sp. Phil11_3

Sample Origin
Body SitesNo. SamplesFraction
Mouth00
Skin00
Vagina00
Gut650.263157895
Number of homologs from non-human metagenomesNumber of different types of non-human environmentsNon human environments in which homologs exist_number of homologs
21Mammals_2

Function prediction
% of family members that are predicted to have a transmembrane domain (TMHMM)0
Is family classified as Transmembrane (TMHMM)0
% of family members that are predicted to have a signal peptide in gram+ (SignalP_v5.0)0
Is family predicted to be secreted in gram+ (SignalP_v5.0)0
% of family members that are predicted to have a signal peptide in gram- (SignalP_v5.0)0
Is family predicted to be secreted in gram- (SignalP_v5.0)0
Number of members the are transmembrane (Phobius)0
Fraction of members that are transmembrane (Phobius)0
Number of members that are secreted (Phobius)0
Fraction of members that are secreted (Phobius)0
Number of significant complete CDD hits that were assigned to family representative sequence0
PSSMs assignedNA
Domains assignedNA

References
PubMed ID31402174
TitleLarge-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes
AuthorsHila Sberro, Brayon J. Fremin, Soumaya Zlitni, Fredrik Edfors, Nicholas Greenfield, Michael P. Snyder, Georgios A. Pavlopoulos, Nikos C. Kyrpides, and Ami S. Bhatt
JournalCell 178, 1–15, August 22, 2019