Specific Information of Small Protein : SPROHSA385719
General Information
| Small Protein ID | SPROHSA385719 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | LGLFAAGVWLARYFSDIDLMAPQPGV |
| RNA Sequence | TTGGGACTCTTTGCTGCGGGAGTTTGGCTGGCCAGGTACTTCAGTGACATTGACCTCATGGCACCTCAGCCAGGAGTG |
| Protein Length | 26 |
| Start Codon | TTG |
| Location | chr12:125056359-125056437:- |
| Blocks | 125056359-125056437 |
| Mean PhyloCSF | 0 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000256093; AC122688.1; NONHSAG012659;NONHSAG012660; |
| Mass (Da) | mono. 2806.5; avg. 2808.3 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR4045276_alt | ENSG00000256093.1 | ENST00000541494.1 | AC122688.1 | Processed_pseudogene | Novel | 0.02965 | None | 144 | 222 | 24 | 72.8741698 |
| SRR3208921_alt | ENSG00000256093.1 | ENST00000541494.1 | AC122688.1 | Processed_pseudogene | Novel | 0.034176 | None | 144 | 222 | 4 | 11.3991930 |
| GSE105082_alt | ENSG00000256093.1 | ENST00000541494.1 | AC122688.1 | Processed_pseudogene | Novel | 0.039886 | None | 144 | 222 | 48 | 41.8183553 |
| SRR2991181_alt | ENSG00000256093.1 | ENST00000541494.1 | AC122688.1 | Processed_pseudogene | Novel | 0.03994 | None | 144 | 222 | 35 | 73.3419528 |
| Min Ribo P value | 0.02965 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE105082_alt | HELA | Cervical cancer | GSM2817679; GSM2817680 | 30591072; |
| SRR2991181_alt | SH-SY5Y | Neuroblastoma | GSM1970518 | 31109297; |
| SRR3208921_alt | ES cell-derived neurons TSC2-/- | Tuberous sclerosis complex | GSM2082573 | 27655340; |
| SRR4045276_alt | Meg01 cells | WT | GSM2285909 | 27681415; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| 12-125056363-T-C | Synonymous p.G25G | . | SRR5239058 |
Related Small Proteins with Different TISs
| SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|
| No results |
SmProt