SmProt

Specific Information of Small Protein : SPROHSA385367

General Information

Small Protein ID	SPROHSA385367
Organism	Human (Homo sapiens)
Small Protein Sequence	LAFSEETETLRHEYCDTDHQANLTSADILSQMKRNLGTNNCRGRSQRMACPEDSQIHPSNRLHCRRQSGFILYSPCRLPSS*
RNA Sequence	TTGGCTTTTTCAGAGGAAACAGAGACTCTCAGACATGAATACTGTGACACTGACCACCAGGCCAACTTAACATCAGCAGATATCCTGTCTCAGATGAAGAGGAATCTTGGTACCAATAATTGCAGAGGTAGAAGTCAGAGAATGGCCTGTCCAGAAGACAGCCAAATACATCCTTCAAACAGACTTCACTGCAGGAGACAGAGTGGATTCATCCTGTATTCTCCATGTAGACTTCCATCTTCATGA
Protein Length	81
Start Codon	TTG
Location	chr10:95876554-95904930:-
Blocks	95876554-95876660,95878224-95878263,95904829-95904930
Mean PhyloCSF	-7.21115042911
Data Source	Ribosome profiling;
Related Genes	ENSG00000138185; ENTPD1; ENSG00000226688; ENTPD1-AS1; ENSG00000270099; AL365273.2; NONHSAG061460;NONHSAG006591;
Mass (Da)	mono. 9275.4; avg. 9281.2

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
SRR5512738_alt	ENSG00000226688.7	ENST00000664887.1	ENTPD1-AS1	LncRNA	Novel	0.00121	None	243	489	16	8.24513076
SRR3208885_alt	ENSG00000226688.7	ENST00000664887.1	ENTPD1-AS1	LncRNA	Novel	0.010122	None	243	489	21	15.3369263
SRR3317843_alt	ENSG00000226688.7	ENST00000664887.1	ENTPD1-AS1	LncRNA	Novel	0.043589	None	243	489	4	13.6838380
GSE65778	ENSG00000226688.7	ENST00000664887.1	ENTPD1-AS1	LncRNA	Novel	0.017591	None	243	489	25	17.8211561

Min Ribo P value	0.00121
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
GSE65778	HEK293T	WT	GSM1606107; GSM1606108	25719440;
SRR3208885_alt	ES cell-derived neurons TSC2+/+	WT	GSM2082537	27655340;
SRR3317843_alt	U2OS cells	WT	GSM2103080	27406171;
SRR5512738_alt	GM19147-Lymphoblastoid Cell Line	WT	GSM2601312	29950183;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
No results

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
No results

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
SPROHSA125174	11	ATC	-	95876554-95876590
SPROHSA68931	17	AGG	-	95876554-95876608
SPROHSA101818	26	ATA	-	95876554-95876635
SPROHSA195425	34	ATG	-	95876554-95876659