Specific Information of Small Protein : SPROHSA361906
General Information
| Small Protein ID | SPROHSA361906 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | VSYRLCHGVKQKQIMACPEDSQIHPSNRLHCRRQSGFILYSPCRLPSS* |
| RNA Sequence | GTGTCCTATAGACTTTGTCATGGAGTGAAACAGAAACAAATAATGGCCTGTCCAGAAGACAGCCAAATACATCCTTCAAACAGACTTCACTGCAGGAGACAGAGTGGATTCATCCTGTATTCTCCATGTAGACTTCCATCTTCATGA |
| Protein Length | 48 |
| Start Codon | GTG |
| Location | chr10:95876554-96089306:- |
| Blocks | 95876554-95876660,96089265-96089306 |
| Mean PhyloCSF | -7.93431297289 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000138185; ENTPD1; ENSG00000226688; ENTPD1-AS1; ENSG00000188649; CC2D2B; ENSG00000270099; AL365273.2; ENSG00000227805; RPL21P90; ENSG00000107443; CCNJ; ENSG00000266407; MIR3157; NONHSAG061460;NONHSAG006591;NONHSAG006593;NONHSAG006594;NONHSAG006595;NONHSAG006596; |
| Mass (Da) | mono. 5524.7; avg. 5528.4 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR7207252_alt | ENSG00000226688.7 | ENST00000451364.5 | ENTPD1-AS1 | LncRNA | Novel | 0.023394 | None | 175 | 322 | 8 | 14.3920352 |
| SRR7207252_alt | ENSG00000226688.7 | ENST00000416301.5 | ENTPD1-AS1 | LncRNA | Novel | 0.023394 | None | 234 | 381 | 8 | 14.3920352 |
| SRR7207252_alt | ENSG00000226688.7 | ENST00000656604.1 | ENTPD1-AS1 | LncRNA | Novel | 0.023394 | None | 255 | 402 | 8 | 14.3920352 |
| SRR7207252_alt | ENSG00000226688.7 | ENST00000669711.1 | ENTPD1-AS1 | LncRNA | Novel | 0.023394 | None | 259 | 406 | 8 | 14.3920352 |
| Min Ribo P value | 0.023394 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| SRR7207252_alt | MCF10A-ER-Src | Breast adenocarcinoma | GSM3150265 | 30089253; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
SmProt