Small Protein ID | SPROHSA355 | ||
Organism | Human (Homo sapiens) | ||
Small Protein Sequence | KKTGTTVPESIHSFIGDGLVKPEALNKKAIQIINRVRDKLTGRDFSHDDTLDVPTQVELLIKQATSHENLCQCYIGWCPFW* | ||
RNA Sequence | AAGAAAACGGGGACCACAGTGCCAGAATCTATTCATTCTTTCATTGGAGACGGTTTGGTGAAACCAGAGGCCCTAAATAAGAAAGCTATCCAGATTATTAACAGGGTTCGAGATAAGCTCACTGGTCGGGACTTCTCTCATGATGACACTTTGGATGTTCCAACGCAAGTTGAGCTGCTCATCAAACAAGCGACATCCCATGAAAACCTCTGCCAGTGCTATATTGGCTGGTGCCCTTTCTGGTAA | ||
Protein Length | 81 | ||
Start Codon | AAG | ||
Location | chr1:11107484-11109691:- | ||
Blocks | 11107484-11107500,11108180-11108286,11109289-11109370,11109648-11109691 | ||
Mean PhyloCSF | -6.67510571664 | ||
Data Source | Ribosome profiling; | ||
Related Genes | ENSG00000198793; MTOR; NONHSAG057505; | ||
Mass (Da) | mono. 9160.7; avg. 9166.4 |
Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
---|---|---|---|---|---|---|---|---|---|---|---|
GSE58207_alt | ENSG00000198793.12 | ENST00000376838.5 | MTOR | Protein_coding | Truncated | 2.93E-07 | 0.040878 | 2821 | 3067 | 32 | 13.3966200 |
Min Ribo P value | 2.93E-07 |
Min TIS P value | 0.040878 |
Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
---|---|---|---|---|
GSE58207_alt | HCT116 | Colorectal carcinoma | GSM1403307; GSM1403308 | 25510491; |
No results |
No results |
No results |
Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
---|---|---|---|---|---|---|---|---|---|---|
ProSiteProfiles | PS50290 | Phosphatidylinositol 3- and 4-kinases family profile. | 1 | 81 | 13.645 | T | IPR000403 | Phosphatidylinositol 3-/4-kinase, catalytic domain | ||
SMART | SM01343 | 49 | 81 | 2.9E-17 | T | IPR003152 | FATC domain | GO:0005515 | KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 | |
PANTHER | PTHR11139 | 13 | 80 | 3.7E-27 | T | |||||
PANTHER | PTHR11139:SF9 | 13 | 80 | 3.7E-27 | T | IPR026683 | Serine/threonine-protein kinase TOR | GO:0004674 | KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1|Reactome: R-HSA-1257604|Reactome: R-HSA-1632852|Reactome: R-HSA-165159|Reactome: R-HSA-166208|Reactome: R-HSA-3371571|Reactome: R-HSA-380972|Reactome: R-HSA-389357|Reactome: R-HSA-5218920|Reactome: R-HSA-5628897|Reactome: R-HSA-5674400|Reactome: R-HSA-6804757|Reactome: R-HSA-8943724 | |
Pfam | PF02260 | FATC domain | 51 | 81 | 9.5E-19 | T | IPR003152 | FATC domain | GO:0005515 | KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 |
ProSiteProfiles | PS51190 | FATC domain profile. | 49 | 81 | 18.317 | T | IPR003152 | FATC domain | GO:0005515 | KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 |
Disease | Detected |
---|---|
Colorectal carcinoma | Predicted by Ribo-seq |
Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
---|---|---|---|
No results |
SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
---|---|---|---|---|
SPROHSA22285 | 43 | AAG | - | 11107484-11107500, 11108180-11108286, 11109289-11109299 |
SPROHSA93031 | 47 | AGG | - | 11107484-11107500, 11108180-11108286, 11109289-11109311 |
SPROHSA227133 | 49 | ATT | - | 11107484-11107500, 11108180-11108286, 11109289-11109317 |
SPROHSA339967 | 89 | GTG | - | 11107484-11107500, 11108180-11108286, 11109289-11109370, 11109648-11109715 |