SmProt

Specific Information of Small Protein : SPROHSA328795

General Information

Small Protein ID	SPROHSA328795
Organism	Human (Homo sapiens)
Small Protein Sequence	VQQRLRAAAVAAAAAAVAARGSRR*
RNA Sequence	GTGCAACAgcggctccgggccgccgccgtcgctgctgctgctgctgctgtggctgctCGCGGTTCCCGGCGCTAA
Protein Length	24
Start Codon	GTG
Location	chr1:180154915-180154990:+
Blocks	180154915-180154990
Mean PhyloCSF	-6.27151996613
Data Source	Ribosome profiling;
Related Genes	ENSG00000116260; QSOX1;
Mass (Da)	mono. 2390.4; avg. 2391.7

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
GSE123564_1_alt	ENSG00000116260.17	ENST00000367600.5	QSOX1	Protein_coding	Internal	0.043161	None	19	94	106	281.809233
GSE123564_1	ENSG00000116260.17	ENST00000367600.5	QSOX1	Protein_coding	Internal	0.043161	None	19	94	106	281.809233
GSE123564_1_alt	ENSG00000116260.17	ENST00000392029.6	QSOX1	Protein_coding	Internal	0.043161	None	46	121	106	281.809233
GSE123564_1	ENSG00000116260.17	ENST00000392029.6	QSOX1	Protein_coding	Internal	0.043161	None	46	121	106	281.809233
GSE123564_1_alt	ENSG00000116260.17	ENST00000367602.8	QSOX1	Protein_coding	Internal	0.043161	None	47	122	106	281.809233
GSE123564_1	ENSG00000116260.17	ENST00000367602.8	QSOX1	Protein_coding	Internal	0.043161	None	47	122	106	281.809233

Min Ribo P value	0.043161
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
GSE123564_1	Skin fibroblasts	WT	GSM3507221; GSM3507222; GSM3507226; GSM3507227	30707697;
GSE123564_1_alt	Skin fibroblasts	WT	GSM3507221; GSM3507222; GSM3507226; GSM3507227	30707697;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
No results

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
1-180154959-C-T	Synonymous p.15	.	SRR5239050
1-180154966-G-T	Synonymous p.17	.	SRR5239051

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
No results