Specific Information of Small Protein : SPROHSA312239
General Information
| Small Protein ID | SPROHSA312239 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | LSQMKRMACPEDSQIHPSNRLHCRRQSGFILYSPCRLPSS* |
| RNA Sequence | CTGTCTCAGATGAAGAGAATGGCCTGTCCAGAAGACAGCCAAATACATCCTTCAAACAGACTTCACTGCAGGAGACAGAGTGGATTCATCCTGTATTCTCCATGTAGACTTCCATCTTCATGA |
| Protein Length | 40 |
| Start Codon | CTG |
| Location | chr10:95876554-95904846:- |
| Blocks | 95876554-95876660,95904829-95904846 |
| Mean PhyloCSF | -7.90092684583 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000138185; ENTPD1; ENSG00000226688; ENTPD1-AS1; ENSG00000270099; AL365273.2; NONHSAG061460;NONHSAG006591; |
| Mass (Da) | mono. 4628.3; avg. 4631.3 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR618770,618771,618772,618773_alt | ENSG00000226688.7 | ENST00000669099.1 | ENTPD1-AS1 | LncRNA | Novel | 0.00108 | 0.025107 | 218 | 341 | 18 | 24.7049854 |
| SRR618770,618771,618772,618773_alt | ENSG00000226688.7 | ENST00000665049.1 | ENTPD1-AS1 | LncRNA | Novel | 0.00108 | 0.025107 | 318 | 441 | 18 | 24.7049854 |
| Min Ribo P value | 0.00108 |
| Min TIS P value | 0.025107 |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| SRR618770,618771,618772,618773_alt | HEK293 | WT | SRR618770; SRR618771; SRR618772; SRR618773 | NA; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
SmProt