Specific Information of Small Protein : SPROHSA246172
General Information
Small Protein IDSPROHSA246172
OrganismHuman (Homo sapiens)
Small Protein SequenceISERAGASVPLRRHWEPDGKLR*
RNA SequenceATTTCCGAGAGAGCGGGAGCGTCTGTACCTCTGCGGCGTCACTGGGAGCCCGACGGAAAACTGCGCTAA
Protein Length22
Start CodonATT
Locationchr22:45413701-45413770:+
Blocks45413701-45413770
Mean PhyloCSF-6.47069563036
Data SourceRibosome profiling;
Related GenesENSG00000128408; RIBC2;
Mass (Da)mono. 2529.4; avg. 2530.8
Ribosome profiling
Ribo-seq IDEnsembl Gene IDEnsembl Transcript IDSymbolGene TypeTIS TypeRibo P valueTIS P valueStart On TransStop On TransIn-frame CountRibo-seq RPKM
GSE58207_altENSG00000128408.8ENST00000614167.1RIBC2Protein_coding5'UTR0.0480780.01276911802029.8511641
Min Ribo P value0.048078
Min TIS P value0.012769
Ribo-seq IDCell or TissuePhenotypeRibo-seq Source DetailsPMID
GSE58207_altHCT116Colorectal carcinomaGSM1403307; GSM140330825510491;

Database information
No results
Literature information
No results
Mass Spectrometry Information
No results
Function and Disease
Functional domain prediction Funtion   
AnalysisSignature AccessionSignature DescriptionStart locationStop locationScoreStatus of the matchInterPro accessionInterPro descriptionGOPathways
No results
DiseaseDetected
No results
Related Variants
Variant IDConsequence to sORFrsIDRibo-seq ID
22-45413743-C-ANon-Synonymous p.H14Qrs2272804SRR5350740; SRR5350745; SRR1795425; SRR1795427; SRR618771; SRR618773
Related Small Proteins with Different TISs
SmProt IDSmall Protein LengthStart CodonStrandBlocks
No results