SmProt

Specific Information of Small Protein : SPROHSA210582

General Information

Small Protein ID	SPROHSA210582
Organism	Human (Homo sapiens)
Small Protein Sequence	MVSSRATGRRLLITLMIQTLKSLFFGVSMLMISEAFRYSAENYYSLYYKR*
RNA Sequence	ATGGTGTCATCGAGAGCAACTGGAAGGAGGTTGTTGATAACTTTGATGATACAAACTTTAAAAAGTCTCTTCTTTGGGGTATCTATGCTTATGATTTCAGAAGCCTTCCGCTATTCAGCAGAGAACTATTATTCCCTGTATTACAAAAGGTGA
Protein Length	50
Start Codon	ATG
Location	chr10:73199889-73200372:+
Blocks	73199889-73200032,73200362-73200372
Mean PhyloCSF	0
Data Source	Ribosome profiling;
Related Genes	ENSG00000138286; FAM149B1; ENSG00000213551; DNAJC9; ENSG00000227382; EIF4A2P2; NONHSAG060569;NONHSAG006193;
Mass (Da)	mono. 5904.1; avg. 5907.9

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
GSE105082	ENSG00000227382.1	ENST00000455776.1	EIF4A2P2	Processed_pseudogene	Novel	0.047883	None	64	217	9	3.99734279

Min Ribo P value	0.047883
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
GSE105082	HELA	Cervical cancer	GSM2817679; GSM2817680	30591072;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
No results

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
No results

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
SPROHSA351735	69	GTG	+	73199832-73200032, 73200362-73200372