Specific Information of Small Protein : SPROHSA174447
General Information
Small Protein ID | SPROHSA174447 |
Organism | Human (Homo sapiens) |
Small Protein Sequence | MLQFEKPGSAICLWIQLLDLSTLPVYVPFLFHYERTDCIAHLSGFL* |
RNA Sequence | ATGCTCCAGTTTGAGAAACCTGGATCTGCGATCTGTTTGTGGATTCAATTACTGGACTTGTCAACTCTGCCAGTGTACGTGCCATTTCTCTTCCACTATGAGAGGACCGATTGTATTGCACATTTGTCTGGCTTTCTGTAG |
Protein Length | 46 |
Start Codon | ATG |
Location | chr14:58139314-58291675:- |
Blocks | 58139314-58139414,58291634-58291675 |
Mean PhyloCSF | -6.37112765447 |
Data Source | Ribosome profiling; |
Related Genes | ENSG00000139971; ARMH4; ENSG00000243023; UBA52P3; ENSG00000243700; RN7SL598P; ENSG00000258519; AL121579.1; ENSG00000131966; ACTR10; ENSG00000100567; PSMA3; ENSG00000258682; AL132989.1; ENSG00000257621; PSMA3-AS1; ENSG00000180189; HMGB1P14; ENSG00000279636; AL132989.2; NONHSAG015098;NONHSAG015099;NONHSAG015100;NONHSAG015097;NONHSAG015102;NONHSAG015106;NONHSAG015108;NONHSAG068810;NONHSAG107498; |
Mass (Da) | mono. 5323.7; avg. 5327.2 |
Ribosome profiling
Min Ribo P value | 0.014894 |
Min TIS P value | None |
Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
---|
SRR5047771 | iPSC-differentiated dopamine neurons | Parkinson Disease | NA | NA; |
Mass Spectrometry Information
Function and Disease
Functional domain prediction |      |
Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
---|
No results |
Disease | Detected |
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No results |
Related Variants
Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
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No results |
Related Small Proteins with Different TISs
SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
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No results |