SmProt

Specific Information of Small Protein : SPROHSA158449

General Information

Small Protein ID	SPROHSA158449
Organism	Human (Homo sapiens)
Small Protein Sequence	MMTSLTWGCSLCPGGLLCAAFCGTV*
RNA Sequence	ATGATGACGAGTCTGACTTGGGGATGTTCTCTTTGCCCAGGTGGCCTACTCTGTGCTGCGTTCTGTGGCACAGTTTAA
Protein Length	25
Start Codon	ATG
Location	chr11:75400403-75400481:+
Blocks	75400403-75400481
Mean PhyloCSF	-5.342846146
Data Source	Ribosome profiling;
Related Genes	ENSG00000149273; RPS3; ENSG00000206941; SNORD15A;
Mass (Da)	mono. 2521.1; avg. 2523.1

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
GSE81802_alt	ENSG00000149273.15	ENST00000528847.1	RPS3	Protein_coding	5'UTR	0.034176	5.216E-08	0	78	NA	NA
GSE81802_alt	ENSG00000206941.1	ENST00000384214.1	SNORD15A	SnoRNA	Novel	0.034176	3.477E-05	13	91	NA	NA

Min Ribo P value	0.034176
Min TIS P value	5.216E-08

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
GSE81802_alt	CD19+ B cells	WT	GSM2175737	29529302;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
No results

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
11-75400433-T-C	Synonymous p.S10S	.	SRR5239058

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
No results