SmProt

Specific Information of Small Protein : SPROHSA145932

General Information

Small Protein ID	SPROHSA145932
Organism	Human (Homo sapiens)
Small Protein Sequence	MTDSSARTEALSILYPAVR*
RNA Sequence	ATGACAGACagctctgcaagaacggaggccctgtctattttgtacccagctgtacgTTAA
Protein Length	19
Start Codon	ATG
Location	chr2:174396175-174398278:+
Blocks	174396175-174396231,174398274-174398278
Mean PhyloCSF	-5.7321166118
Data Source	Ribosome profiling;
Related Genes	ENSG00000144306; SCRN3; NONHSAG077962;
Mass (Da)	mono. 2080.1; avg. 2081.3

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
SRR5047771	ENSG00000144306.14	ENST00000427038.5	SCRN3	Protein_coding	5'UTR	0.009936	None	368	428	4	3.04881362
GSE94613_2	ENSG00000144306.14	ENST00000427038.5	SCRN3	Protein_coding	5'UTR	0.009936	None	368	428	6	20.8083979
GSE94613_2_alt	ENSG00000144306.14	ENST00000427038.5	SCRN3	Protein_coding	5'UTR	0.009936	None	368	428	6	20.8083979

Min Ribo P value	0.009936
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
GSE94613_2	MOLM13	Acute myeloid leukemia	GSM2481053	29186125;
GSE94613_2_alt	MOLM13	Acute myeloid leukemia	GSM2481053	29186125;
SRR5047771	iPSC-differentiated dopamine neurons	Parkinson Disease	NA	NA;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
No results

Disease	Detected
Acute myeloid leukemia	Predicted by Ribo-seq

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
2-174396181-A-T	Synonymous p.T2T	rs79355383	SRR5239057; SRR5239058

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
No results