Specific Information of Small Protein : SPROHSA142601
General Information
| Small Protein ID | SPROHSA142601 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | MKAVSGMKSDSSSFTTSSGALPALLPSIASSSVLPEF* |
| RNA Sequence | ATGAAGGCCGTTTCTGGAATGAAGTCTGACTCCTCCAGTTTCACCACCTCTTCCGGAGCTCTCCCCGCCTTGCTGCCTTCCATCGCTTCATCCTCGGTGCTTCCTGAGTTTTAA |
| Protein Length | 37 |
| Start Codon | ATG |
| Location | chr8:11803331-11803445:+ |
| Blocks | 11803331-11803445 |
| Mean PhyloCSF | -7.23371062153 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000079459; FDFT1; |
| Mass (Da) | mono. 3686.8; avg. 3689.2 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE94613_2 | ENSG00000079459.13 | ENST00000525551.1 | FDFT1 | Protein_coding | Novel | 0.003419 | None | 158 | 272 | 5 | 9.12649032 |
| GSE94613_2 | ENSG00000079459.13 | ENST00000527045.1 | FDFT1 | Protein_coding | Novel | 0.003419 | None | 158 | 272 | 5 | 9.12649032 |
| GSE94613_2 | ENSG00000079459.13 | ENST00000525607.5 | FDFT1 | Protein_coding | Internal | 0.003419 | None | 201 | 315 | 5 | 9.12649032 |
| GSE94613_2 | ENSG00000079459.13 | ENST00000525571.1 | FDFT1 | Protein_coding | Novel | 0.003419 | None | 309 | 423 | 5 | 9.12649032 |
| GSE94613_2 | ENSG00000079459.13 | ENST00000528812.5 | FDFT1 | Protein_coding | 5'UTR | 0.003419 | None | 320 | 434 | 5 | 9.12649032 |
| GSE94613_2 | ENSG00000079459.13 | ENST00000623368.3 | FDFT1 | Protein_coding | 5'UTR | 0.003419 | None | 331 | 445 | 5 | 9.12649032 |
| Min Ribo P value | 0.003419 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE94613_2 | MOLM13 | Acute myeloid leukemia | GSM2481053 | 29186125; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| Acute myeloid leukemia | Predicted by Ribo-seq |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| 8-11803407-C-T | Non-Synonymous p.P26S | rs2252567 | SRR5239051; SRR5239052 |
Related Small Proteins with Different TISs
| SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|
| SPROHSA32325 | 36 | AAG | + | 11803334-11803445 |
SmProt