SmProt

Specific Information of Small Protein : SPROHSA136200

General Information

Small Protein ID	SPROHSA136200
Organism	Human (Homo sapiens)
Small Protein Sequence	MKKMPLFSKSHKNPAEIVKILKDNLAILEKQDKKTDKASEEVSKSLQAMKEILCGTNEKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEV
RNA Sequence	ATGAAAAAAATGCCTTTGTTTAGTAAATCACACAAAAATCCAGCAGAAATTGTGAAAATCCTGAAAGACAATTTGGCCATTTTGGAAAAGCAAGACAAAAAGACAGACAAGGCTTCAGAAGAAGTGTCTAAATCACTGCAAGCAATGAAAGAAATTCTGTGTGGTACAAACGAGAAAGAACCCCCAACAGAAGCAGTGGCTCAGCTAGCACAAGAACTCTACAGCAGTGGCCTGCTAGTGACACTGATAGCTGACCTGCAGCTGATAGACTTTGAGGTA
Protein Length	93
Start Codon	ATG
Location	chr13:49376963-49382910:-
Blocks	49376963-49377131,49382799-49382910
Mean PhyloCSF	-7.54025807432
Data Source	Ribosome profiling;
Related Genes	ENSG00000102547; CAB39L;
Mass (Da)	mono. 10349.5; avg. 10356

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
SRR5047771	ENSG00000102547.19	ENST00000409082.5	CAB39L	Protein_coding	Annotated	2.269E-09	None	188	467	91	14.9162387

Min Ribo P value	2.269E-09
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
SRR5047771	iPSC-differentiated dopamine neurons	Parkinson Disease	NA	NA;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	Pathways
Gene3D	G3DSA:1.25.10.10		4	93	1.1E-24	T	IPR011989	Armadillo-like helical
PANTHER	PTHR10182		3	93	1.5E-53	T	IPR013878	Mo25-like	Reactome: R-HSA-380972
SUPERFAMILY	SSF48371		12	93	2.88E-20	T	IPR016024	Armadillo-type fold
PANTHER	PTHR10182:SF9		3	93	1.5E-53	T
Pfam	PF08569	Mo25-like	6	92	4.7E-20	T	IPR013878	Mo25-like	Reactome: R-HSA-380972

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
No results

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
No results