SmProt

Specific Information of Small Protein : SPROHSA136185

General Information

Small Protein ID	SPROHSA136185
Organism	Human (Homo sapiens)
Small Protein Sequence	MKKKRKQK*
RNA Sequence	atgaaaaaaaagaggaagcagaagTAA
Protein Length	8
Start Codon	atg
Location	chr15:44550897-44550924:+
Blocks	44550897-44550924
Mean PhyloCSF	-7.04611110687
Data Source	Ribosome profiling;
Related Genes	ENSG00000104131; EIF3J;
Mass (Da)	mono. 1073.7; avg. 1074.4

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
SRR5047770	ENSG00000104131.13	ENST00000535391.5	EIF3J	Protein_coding	Internal	0.028718	None	181	208	3	8.81557713
SRR5047770_alt	ENSG00000104131.13	ENST00000535391.5	EIF3J	Protein_coding	Internal	0.028718	None	181	208	3	8.81557713
SRR5047770	ENSG00000104131.13	ENST00000558227.1	EIF3J	Protein_coding	Novel	0.028718	None	215	242	3	8.81557713
SRR5047770_alt	ENSG00000104131.13	ENST00000558227.1	EIF3J	Protein_coding	Novel	0.028718	None	215	242	3	8.81557713
SRR5047770	ENSG00000104131.13	ENST00000261868.10	EIF3J	Protein_coding	Internal	0.028718	None	217	244	3	8.81557713
SRR5047770_alt	ENSG00000104131.13	ENST00000261868.10	EIF3J	Protein_coding	Internal	0.028718	None	217	244	3	8.81557713

Min Ribo P value	0.028718
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
SRR5047770	iPSC-differentiated dopamine neurons	Parkinson Disease	GSM2402496; GSM2402497; GSM2402498	NA;
SRR5047770_alt	iPSC-differentiated dopamine neurons	Parkinson Disease	GSM2402496; GSM2402497; GSM2402498	NA;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
No results

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
No results

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
No results