Specific Information of Small Protein : SPROHSA136182
General Information
| Small Protein ID | SPROHSA136182 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | MKKKKKKSLRSLQFQFLFHSVSQTPTHHSLENGKKKQKKNKKMYNGCIEIICNCINGATVIKLNN* |
| RNA Sequence | ATGaaaaaaaaaaaaaaaaaaaGTCTGCGTTCATTGCAGTTCCAGTTTCTCTTCCATTCTGTGTCACAGACACCAACACACCACTCATTGGAAAATGGaaaaaaaaaacaaaaaaaaaacaaaaaaaTGTACAATGGATGCATTGAAATTATATGTAATTGTATAAATGGTGCAACAGTAATAAAGTTAAACAATTAA |
| Protein Length | 65 |
| Start Codon | ATG |
| Location | chr5:17276630-17276828:+ |
| Blocks | 17276630-17276828 |
| Mean PhyloCSF | -4.80074241227 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000176788; BASP1; |
| Mass (Da) | mono. 7529; avg. 7533.9 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR5047772 | ENSG00000176788.9 | ENST00000616743.1 | BASP1 | Protein_coding | 3'UTR | 0.027392 | None | 1498 | 1696 | 6 | 5.35826788 |
| SRR5047772 | ENSG00000176788.9 | ENST00000322611.4 | BASP1 | Protein_coding | 3'UTR | 0.027392 | None | 1603 | 1801 | 6 | 5.35826788 |
| Min Ribo P value | 0.027392 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| SRR5047772 | iPSC-differentiated dopamine neurons | Parkinson Disease | NA | NA; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
| SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|
| No results |
SmProt