Specific Information of Small Protein : SPROHSA100420
General Information
Small Protein IDSPROHSA100420
OrganismHuman (Homo sapiens)
Small Protein SequenceISQLLPEAMLLFSSSVFVARICICIKMI*
RNA SequenceATAAGTCAGTTACTCCCGGAGGCAATGCTGCTGTTCAGCTCTTCTGTTTTTGTGGCCAGAATCTGTATCTGTATCAAGATGATCTGA
Protein Length28
Start CodonATA
Locationchr4:38798870-38804364:-
Blocks38798870-38798898,38804305-38804364
Mean PhyloCSF-9.69258623562
Data SourceRibosome profiling;
Related GenesENSG00000174125; TLR1;
Mass (Da)mono. 3124.7; avg. 3126.9
Ribosome profiling
Ribo-seq IDEnsembl Gene IDEnsembl Transcript IDSymbolGene TypeTIS TypeRibo P valueTIS P valueStart On TransStop On TransIn-frame CountRibo-seq RPKM
SRR7207252_altENSG00000174125.8ENST00000515861.5TLR1Protein_coding5'UTR0.034473None181268412.1587884
Min Ribo P value0.034473
Min TIS P valueNone
Ribo-seq IDCell or TissuePhenotypeRibo-seq Source DetailsPMID
SRR7207252_altMCF10A-ER-SrcBreast adenocarcinomaGSM315026530089253;

Database information
No results
Literature information
No results
Mass Spectrometry Information
No results
Function and Disease
Functional domain prediction Funtion   
AnalysisSignature AccessionSignature DescriptionStart locationStop locationScoreStatus of the matchInterPro accessionInterPro descriptionGOPathways
No results
DiseaseDetected
No results
Related Variants
Variant IDConsequence to sORFrsIDRibo-seq ID
No results
Related Small Proteins with Different TISs
SmProt IDSmall Protein LengthStart CodonStrandBlocks
No results