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The statistics of new interactions in NPInter database New!
| Data Source |
The Number of Interactions |
| CLIP-seq |
163,855 |
| AGO CLIP-seq |
1,323,636 |
| ChIRP-seq, CHART-seq |
2,476,763 |
| iMARGI, ChAR-seq, GRID-seq |
4,963,704 |
| Literature Mining |
8,586 |
The statistics of interactions in different classes in NPInter database
| Class |
The Number of Interactions |
| Binding |
2,579,283 |
| Regulatory |
138,868 |
| Expression Correlation |
383 |
| Coexpression |
61 |
The statistics of interactions in different levels in NPInter database
| Level |
The Number of Interactions |
| RNA-RNA |
1932,654 |
| RNA-Protein |
650,180 |
| RNA-DNA |
8,329,382 |
| RNA-TF |
5 |
The statistics of interactions in different data sources in NPInter database
| Data Sources |
The Number of Interactions |
| High-throughput data |
659,948 |
| miRanda with Ago CLIP data |
1,433,229 |
| TargetScan with Ago CLIP data |
248,295 |
| RISE Database |
129,585 |
| Literature mining |
18,181 |
| miRanda and TargetScan with Ago CLIP data |
106,153 |
The statistics of interactions in different species in NPInter database
| Organisms |
The Number of Interactions |
| Homo sapiens |
1,413,842 |
| Mus musculus |
1,171,043 |
| Saccharomyces cerevisiae |
543 |
| Agrobacterium tumefaciens |
208 |
| Escherichia coli |
78 |
| Caenorhabditis elegans |
66 |
| Drosophila melanogaster |
54 |
| Kaposi sarcoma-associated herpesvirus |
41 |
| Others |
242 |