InterID NcRNAName NcRNAID NcRNAType PartnerName PartnerID PartnerType Description Experiment Organism PubMedID TissueOrCellLine DataSource ncRI-40010766 ADD3 NONHSAG006846 lncRNA hnRNPL P14866 protein Binding profile from resting CD4 combined CLIP-seq experiments, this sample represents 3 CD4 resting samples CLIP-Seq Homo sapiens 24164894 CD4+ T; Jurkat; JSL1 High-throughput data ncRI-40010767 ADD3 NONHSAG006846 lncRNA ADAR P55265 protein Genomic analysis of ADAR1 binding CLIP-Seq Homo sapiens 25751603 U87MG High-throughput data ncRI-40010768 ADD3 NONHSAG006846 lncRNA WDR33 Q9C0J8 protein PAR-CLIP showed that WDR33 binds in and very close to the AAUAAA signal PAR-CLIP Homo sapiens 25301781 HEK293 High-throughput data ncRI-40086201 ADD3 NONHSAG006846 lncRNA HNRNPA1 P09651 protein Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins;CLIPseq data were analysed by CLIPdb CLIP-Seq Homo sapiens 22574288 HEK293T High-throughput data ncRI-40089181 ADD3 NONHSAG006846 lncRNA HNRNPF P52597 protein Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins;CLIPseq data were analysed by CLIPdb CLIP-Seq Homo sapiens 22574288 HEK293T High-throughput data ncRI-40090311 ADD3 NONHSAG006846 lncRNA hnRNPM P52272 protein Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins;CLIPseq data were analysed by CLIPdb CLIP-Seq Homo sapiens 22574288 HEK293T High-throughput data ncRI-40092494 ADD3 NONHSAG006846 lncRNA CPSF7 Q8N684 protein We performed PAR-CLIP experiments for 3' end processing factors;CLIPseq data were analysed by CLIPdb PAR-CLIP Homo sapiens 22813749 HEK293 High-throughput data ncRI-40097750 ADD3 NONHSAG006846 lncRNA CPSF6 Q16630 protein We performed PAR-CLIP experiments for 3' end processing factors;CLIPseq data were analysed by CLIPdb PAR-CLIP Homo sapiens 22813749 HEK293 High-throughput data ncRI-40104715 ADD3 NONHSAG006846 lncRNA CSTF2T Q9H0L4 protein We performed PAR-CLIP experiments for 3' end processing factors;CLIPseq data were analysed by CLIPdb PAR-CLIP Homo sapiens 22813749 HEK293 High-throughput data ncRI-40109852 ADD3 NONHSAG006846 lncRNA ZC3H7B Q9UGR2 protein The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts;CLIPseq data were analysed by CLIPdb PAR-CLIP Homo sapiens 22681889 HEK293 High-throughput data ncRI-40116110 ADD3 NONHSAG006846 lncRNA CSTF2 P33240 protein We mapped CstF64-RNA interactions at the transcriptome level;CLIPseq data were analysed by CLIPdb iCLIP Homo sapiens 23112178 HeLa High-throughput data ncRI-40118657 ADD3 NONHSAG006846 lncRNA hnRNPC P07910 protein Quantitative iCLIP reveals genome-wide competition of hnRNP C and U2AF65;CLIPseq data were analysed by CLIPdb iCLIP Homo sapiens 23374342 HeLa High-throughput data ncRI-40121256 ADD3 NONHSAG006846 lncRNA TDP-43 - protein CLIP-Seq of human brain and neuroblastoma sample to characterisethe RNA targets and position-dependent splicing regulation by TDP-43;CLIPseq data were analysed by CLIPdb iCLIP Homo sapiens 21358640 SH-SY5Y High-throughput data ncRI-40122954 ADD3 NONHSAG006846 lncRNA TARBP2 Q15633 protein Identify TARBP2 binding sites on endogenous RNA. HITS-CLIP Homo sapiens 25043050 MDA-LM2 High-throughput data ncRI-40128435 ADD3 NONHSAG006846 lncRNA RBM6 P78332 protein CLIP-Seq analysis of RBM5, RBM6 and RBM10, with 2 biological replicates and one non-specific control for each protein. CLIP-Seq Homo sapiens 24332178 HeLa High-throughput data ncRI-40138428 ADD3 NONHSAG006846 lncRNA RBM10 P98175 protein CLIP-Seq analysis of RBM5, RBM6 and RBM10, with 2 biological replicates and one non-specific control for each protein. CLIP-Seq Homo sapiens 24332178 HeLa High-throughput data ncRI-40147438 ADD3 NONHSAG006846 lncRNA MOV10 P22626 protein we demonstrate that MOV10 has an ATP-dependent 5 to 3 in vitro RNA unwinding activity and determine the RNA-binding sites of MOV10 and its helicase mutants using PAR-CLIP. PAR-CLIP Homo sapiens 24726324 HEK293 High-throughput data ncRI-40156559 ADD3 NONHSAG006846 lncRNA UPF1 Q92900 protein PAR-CLIP of UPF1 reveals that MOV10 and UPF1 bind to RNA in close proximity. PAR-CLIP Homo sapiens 24726324 HEK293 High-throughput data ncRI-40169028 ADD3 NONHSAG006846 lncRNA hnRNPA2B1 O88569 protein Nuclear HNRNPA2B1 HITS-CLIP. HITS-CLIP Homo sapiens MDA-MB-231 High-throughput data ncRI-40196518 ADD3 NONHSAG006846 lncRNA FUS P35637 protein CLIP of Fus/Tls in adult human brain. CLIP-Seq Homo sapiens 23023293 human brain High-throughput data ncRI-40291630 ADD3 NONHSAG006849 lncRNA hsa-miR-1298-5p MI0003938 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40301192 ADD3 NONHSAG006846 lncRNA hsa-mir-186-3p MI0000483 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40308653 ADD3 NONHSAG006848 lncRNA hsa-mir-216a-3p MI0000292 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40316290 ADD3 NONHSAG006846 lncRNA hsa-mir-30e-3p MI0000749 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40318894 ADD3 NONHSAG006848 lncRNA hsa-mir-32 MI0000090 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40319089 ADD3 NONHSAG006846 lncRNA hsa-miR-326 MI0000808 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40319874 ADD3 NONHSAG006846 lncRNA hsa-miR-330-3p MI0000803 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40323620 ADD3 NONHSAG006848 lncRNA hsa-mir-367-3p MI0000775 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40331303 ADD3 NONHSAG006846 lncRNA hsa-miR-433 MI0001723 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40331903 ADD3 NONHSAG006848 lncRNA hsa-mir-448 MI0001637 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40335244 ADD3 NONHSAG006848 lncRNA hsa-mir-488-3p MI0003123 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40336463 ADD3 NONHSAG006849 lncRNA hsa-miR-495-3p MI0003135 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40341388 ADD3 NONHSAG006849 lncRNA hsa-miR-5688 MI0019292 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40360418 ADD3 NONHSAG006846 lncRNA hsa-mir-122 MI0000442 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40364388 ADD3 NONHSAG006846 lncRNA hsa-mir-140-3p MI0000456 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40382380 ADD3 NONHSAG006846 lncRNA hsa-mir-31-5p MI0000089 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40383581 ADD3 NONHSAG006848 lncRNA hsa-miR-323a-3p MI0000807 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40389722 ADD3 NONHSAG006846 lncRNA hsa-mir-374a-3p MI0000782 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40389923 ADD3 NONHSAG006846 lncRNA hsa-miR-374b-3p MI0005566 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40391953 ADD3 NONHSAG006846 lncRNA hsa-miR-379-3p MI0000787 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40392983 ADD3 NONHSAG006848 lncRNA hsa-miR-409-5p MI0001735 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40393311 ADD3 NONHSAG006848 lncRNA hsa-miR-410-3p MI0002465 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40393589 ADD3 NONHSAG006846 lncRNA hsa-mir-411 MI0003675 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data