InterID NcRNAName NcRNAID NcRNAType PartnerName PartnerID PartnerType Description Experiment Organism PubMedID TissueOrCellLine DataSource ncRI-40038092 PBX1 NONHSAG003318 lncRNA hnRNPL P14866 protein Binding profile from resting CD4 combined CLIP-seq experiments, this sample represents 3 CD4 resting samples CLIP-Seq Homo sapiens 24164894 CD4+ T; Jurkat; JSL1 High-throughput data ncRI-40038093 PBX1 NONHSAG003318 lncRNA ADAR P55265 protein Genomic analysis of ADAR1 binding CLIP-Seq Homo sapiens 25751603 U87MG High-throughput data ncRI-40038094 PBX1 NONHSAG003318 lncRNA AGO2 Q8CJG0 protein Original Ago HITS-CLIP data of BC-3 and BCBL-1 cell lines HITS-CLIP Homo sapiens 25648438 BCBL1Rta High-throughput data ncRI-40038095 PBX1 NONHSAG003318 lncRNA WDR33 Q9C0J8 protein PAR-CLIP showed that WDR33 binds in and very close to the AAUAAA signal PAR-CLIP Homo sapiens 25301781 HEK293 High-throughput data ncRI-40038098 PBX1 NONHSAG003318 lncRNA Rbm20 Q5T481 protein Rbm20 targets in Cardiomyocyte by HITS-CLIP HITS-CLIP Homo sapiens 24960161 Cardiomyocyte High-throughput data ncRI-40085048 PBX1 NONHSAG003318 lncRNA HNRH1 P31943 protein hnRNP H in regulation of alternative cleavage and polyadenylation, a role that is supported by CLIP-Seq;CLIPseq data were analysed by CLIPdb CLIP-Seq Homo sapiens 21057496 HEK293T High-throughput data ncRI-40086026 PBX1 NONHSAG003320 lncRNA HNRNPA1 P09651 protein Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins;CLIPseq data were analysed by CLIPdb CLIP-Seq Homo sapiens 22574288 HEK293T High-throughput data ncRI-40089106 PBX1 NONHSAG003320 lncRNA HNRNPF P52597 protein Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins;CLIPseq data were analysed by CLIPdb CLIP-Seq Homo sapiens 22574288 HEK293T High-throughput data ncRI-40090194 PBX1 NONHSAG003318 lncRNA hnRNPM P52272 protein Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins;CLIPseq data were analysed by CLIPdb CLIP-Seq Homo sapiens 22574288 HEK293T High-throughput data ncRI-40092193 PBX1 NONHSAG003318 lncRNA CPSF7 Q8N684 protein We performed PAR-CLIP experiments for 3' end processing factors;CLIPseq data were analysed by CLIPdb PAR-CLIP Homo sapiens 22813749 HEK293 High-throughput data ncRI-40101057 PBX1 NONHSAG003318 lncRNA CSTF2 P33240 protein We performed PAR-CLIP experiments for 3' end processing factors;CLIPseq data were analysed by CLIPdb iCLIP;PAR-CLIP Homo sapiens 22813749; 23112178 HeLa; HEK293 High-throughput data ncRI-40104542 PBX1 NONHSAG003318 lncRNA CSTF2T Q9H0L4 protein We performed PAR-CLIP experiments for 3' end processing factors;CLIPseq data were analysed by CLIPdb PAR-CLIP Homo sapiens 22813749 HEK293 High-throughput data ncRI-40109681 PBX1 NONHSAG003320 lncRNA ZC3H7B Q9UGR2 protein The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts;CLIPseq data were analysed by CLIPdb PAR-CLIP Homo sapiens 22681889 HEK293 High-throughput data ncRI-40118516 PBX1 NONHSAG003318 lncRNA hnRNPC P07910 protein Quantitative iCLIP reveals genome-wide competition of hnRNP C and U2AF65;CLIPseq data were analysed by CLIPdb iCLIP Homo sapiens 20601959; 23374342 HeLa High-throughput data ncRI-40120689 PBX1 NONHSAG003320 lncRNA TIAL1 E7ETC0 protein iCLIP predicts the dual splicing effects of TIA-RNA interactions;CLIPseq data were analysed by CLIPdb iCLIP Homo sapiens 21048981 HeLa High-throughput data ncRI-40121231 PBX1 NONHSAG003318 lncRNA TDP-43 - protein CLIP-Seq of human brain and neuroblastoma sample to characterisethe RNA targets and position-dependent splicing regulation by TDP-43;CLIPseq data were analysed by CLIPdb iCLIP Homo sapiens 21358640 SH-SY5Y High-throughput data ncRI-40122717 PBX1 NONHSAG003320 lncRNA TARBP2 Q15633 protein Identify TARBP2 binding sites on endogenous RNA. HITS-CLIP Homo sapiens 25043050 MDA-LM2 High-throughput data ncRI-40127865 PBX1 NONHSAG003318 lncRNA RBM6 P78332 protein CLIP-Seq analysis of RBM5, RBM6 and RBM10, with 2 biological replicates and one non-specific control for each protein. CLIP-Seq Homo sapiens 24332178 HeLa High-throughput data ncRI-40137903 PBX1 NONHSAG003318 lncRNA RBM10 P98175 protein CLIP-Seq analysis of RBM5, RBM6 and RBM10, with 2 biological replicates and one non-specific control for each protein. CLIP-Seq Homo sapiens 24332178 HeLa High-throughput data ncRI-40146884 PBX1 NONHSAG003318 lncRNA MOV10 P22626 protein we demonstrate that MOV10 has an ATP-dependent 5 to 3 in vitro RNA unwinding activity and determine the RNA-binding sites of MOV10 and its helicase mutants using PAR-CLIP. PAR-CLIP Homo sapiens 24726324 HEK293 High-throughput data ncRI-40156021 PBX1 NONHSAG003318 lncRNA UPF1 Q92900 protein PAR-CLIP of UPF1 reveals that MOV10 and UPF1 bind to RNA in close proximity. PAR-CLIP Homo sapiens 24726324 HEK293 High-throughput data ncRI-40164554 PBX1 NONHSAG003320 lncRNA ZFP36 M0QY76 protein Global Target mRNA Specification and Regulation by RNA-Binding Protein ZFP36/Tristetraprolin/TTP. PAR-CLIP Homo sapiens 24401661 HEK293 High-throughput data ncRI-40167358 PBX1 NONHSAG003318 lncRNA hnRNPA2B1 O88569 protein Nuclear HNRNPA2B1 HITS-CLIP. HITS-CLIP Homo sapiens MDA-MB-231 High-throughput data ncRI-40194805 PBX1 NONHSAG003318 lncRNA FUS P35637 protein CLIP of Fus/Tls in adult human brain. CLIP-Seq Homo sapiens 23023293 human brain High-throughput data ncRI-40292867 PBX1 NONHSAG003324 lncRNA hsa-miR-134-5p MI0000474 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40309003 PBX1 NONHSAG003324 lncRNA hsa-miR-217 MI0000293 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40312435 PBX1 NONHSAG003324 lncRNA hsa-miR-296-3p MI0000747 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40315758 PBX1 NONHSAG003324 lncRNA hsa-miR-30b-3p MI0000441 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40316454 PBX1 NONHSAG003324 lncRNA hsa-miR-3118 MI0014131 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40318740 PBX1 NONHSAG003324 lncRNA hsa-mir-324-3p MI0000813 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40333529 PBX1 NONHSAG003324 lncRNA hsa-miR-4644 MI0017271 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40335537 PBX1 NONHSAG003324 lncRNA hsa-miR-490-3p MI0003125 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40369630 PBX1 NONHSAG003324 lncRNA hsa-mir-186-3p MI0000483 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40375057 PBX1 NONHSAG003324 lncRNA hsa-miR-212-5p MI0000288 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40378269 PBX1 NONHSAG003324 lncRNA hsa-mir-27a/27b MI0000085 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40378481 PBX1 NONHSAG003324 lncRNA hsa-mir-27b-3p MI0000440 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40382703 PBX1 NONHSAG003324 lncRNA hsa-miR-3184-3p MI0014226 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40386036 PBX1 NONHSAG003324 lncRNA hsa-miR-340-5p MI0000802 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40394157 PBX1 NONHSAG003324 lncRNA hsa-miR-423-5p MI0001445 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data