InterID NcRNAName NcRNAID NcRNAType PartnerName PartnerID PartnerType Description Experiment Organism PubMedID TissueOrCellLine DataSource ncRI-40002688 PVT1 NONHSAG051258 lncRNA hsa-miR-106a-3p MI0000113 miRNA mir-CLIp capture of a mirna targetome uncovers lncRNA-mirRNA interactions CLIP Homo sapiens 25531890 HeLa Literature mining ncRI-40002689 PVT1 NONHSAG051258 lncRNA EWSR1 Q01844 protein CLIP Identifies EWS Binding Sites in a Variety of Transcripts CLIP;eCLIP Homo sapiens 22955616; 24813895 HeLa; K562 Literature mining; High-throughput data ncRI-40002690 PVT1 NONHSAG051258 lncRNA YY1 - protein The risk allele (G) of rs378854 reduces binding of the transcription factor YY1 in vitro. The region surrounding rs378854 interacts with the MYC and PVT1 promoters.Expression of the PVT1 oncogene in normal prostate tissue increased with the presence of the risk allele of rs378854, while expression of MYC was not affected. - Homo sapiens 21814516 Literature mining ncRI-40002691 PVT1 NONHSAG051258 lncRNA MYC Hs.202453 protein PVT-1 regulates c-Myc gene transcription over a long distance. PVT-1 is also a downstream target of Myc proteins. - Homo sapiens 17503467 Literature mining ncRI-40040362 PVT1 NONHSAG051258 lncRNA ADAR P55265 protein Genomic analysis of ADAR1 binding CLIP-Seq Homo sapiens 25751603 U87MG High-throughput data ncRI-40040363 PVT1 NONHSAG051258 lncRNA WDR33 Q9C0J8 protein PAR-CLIP showed that WDR33 binds in and very close to the AAUAAA signal PAR-CLIP Homo sapiens 25301781 HEK293 High-throughput data ncRI-40040366 PVT1 NONHSAG051258 lncRNA PTB Q9UKA9 protein collections from lncRNome PAR-CLIP Homo sapiens 23846593 High-throughput data ncRI-40040367 PVT1 NONHSAG051258 lncRNA IGF2BP2 B3FTN5 protein collections from lncRNome PAR-CLIP Homo sapiens 23846593 High-throughput data ncRI-40040368 PVT1 NONHSAG051258 lncRNA RBPMS Q93062 protein RBPMS PAR-CLIP-identified transcriptome-wide RNA-binding sites PAR-CLIP Homo sapiens 24860013 HEK293 High-throughput data ncRI-40040369 PVT1 NONHSAG051258 lncRNA Rbm20 Q5T481 protein Rbm20 targets in HEK293 cells by PAR-CLIP PAR-CLIP Homo sapiens 24960161 HEK293 High-throughput data ncRI-40040370 PVT1 NONHSAG051258 lncRNA Coilin P38432 protein Using UV crosslink-ing and immunoprecipitation (iCLIP) to determine whether mammalian coilin binds RNA in vivo and to identify targets iCLIP Homo sapiens 25514182 HeLa High-throughput data ncRI-40052390 PVT1 NONHSAG051258 lncRNA FUS P35637 protein PAR-CLIP defined global RNA targets for all human FET proteins and two ALS-causing human FUS mutants. CLIP-Seq;PAR-CLIP Homo sapiens 22081015; 23023293 HEK293; human brain High-throughput data ncRI-40052391 PVT1 NONHSAG051258 lncRNA SFRS1 Q07955 protein Cross-linking immunoprecipitation and high-throughput sequencing (CLIP-seq) identified binding sites for SFRS1 in the transcriptome of cultured human embryonic kidney cells. SFRS1 was found to engage many different classes of functionally distinct transcripts including mRNA, miRNA, snoRNAs, ncRNAs, and conserved intergenic transcripts of unknown function. eCLIP;CLIP-Seq Homo sapiens 19116412; 22955616 K562; HEK293T; HepG2 High-throughput data ncRI-40052392 PVT1 NONHSAG051258 lncRNA TNRC6A Q8NDV7 protein PAR-CLIP of TNRC6 family proteins indicates the noncoding transcript as binding site. PAR-CLIP Homo sapiens 20371350 HEK293 High-throughput data ncRI-40058170 PVT1 NONHSAG051258 lncRNA PTBP1 - protein PTB is a well-characterized splicing repressor. CLIP-seq identifies direct RNA targets for PTB in HeLa cells, finding that PTB bound to multiple regions, regardless of whether the site is subject to regulation. CLIP-Seq Homo sapiens 20064465 HeLa High-throughput data ncRI-40058171 PVT1 NONHSAG051258 lncRNA TIA1 P31483 protein T-cell intracellular antigen 1 (TIA1) and TIA1-like 1 (TIAL1) locally enhance exon inclusion by recruiting U1 snRNP to 5' splice sites. UV-crosslinking and immunoprecipitation (iCLIP) found TIA1 and TIAL1 binding positions on human RNAs. eCLIP;iCLIP Homo sapiens 21048981; 22955616 HeLa; K562; HepG2 High-throughput data ncRI-40058172 PVT1 NONHSAG051258 lncRNA TIAL1 E7ETC0 protein T-cell intracellular antigen 1 (TIA1) and TIA1-like 1 (TIAL1) locally enhance exon inclusion by recruiting U1 snRNP to 5' splice sites. UV-crosslinking and immunoprecipitation (iCLIP) found TIA1 and TIAL1 binding positions on human RNAs. iCLIP Homo sapiens 21048981 HeLa High-throughput data ncRI-40085553 PVT1 NONHSAG051258 lncRNA HNRH1 P31943 protein hnRNP H in regulation of alternative cleavage and polyadenylation, a role that is supported by CLIP-Seq;CLIPseq data were analysed by CLIPdb CLIP-Seq Homo sapiens 21057496 HEK293T High-throughput data ncRI-40088299 PVT1 NONHSAG051258 lncRNA HNRNPA1 P09651 protein Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins;CLIPseq data were analysed by CLIPdb eCLIP;CLIP-Seq;CLIP Homo sapiens 22574288; 22955616; 29378331 K562; HEK293T; MCF7; HepG2; T-REx-293T High-throughput data ncRI-40091407 PVT1 NONHSAG051258 lncRNA hnRNPM P52272 protein Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins;CLIPseq data were analysed by CLIPdb eCLIP;CLIP-Seq Homo sapiens 22574288; 22955616 K562; HEK293T; HepG2 High-throughput data ncRI-40097004 PVT1 NONHSAG051258 lncRNA CPSF7 Q8N684 protein We performed PAR-CLIP experiments for 3' end processing factors;CLIPseq data were analysed by CLIPdb PAR-CLIP Homo sapiens 22813749 HEK293 High-throughput data ncRI-40100813 PVT1 NONHSAG051258 lncRNA CPSF1 Q10570 protein We performed PAR-CLIP experiments for 3' end processing factors;CLIPseq data were analysed by CLIPdb PAR-CLIP Homo sapiens 22813749 HEK293 High-throughput data ncRI-40104120 PVT1 NONHSAG051258 lncRNA CSTF2 P33240 protein We performed PAR-CLIP experiments for 3' end processing factors;CLIPseq data were analysed by CLIPdb eCLIP;PAR-CLIP;iCLIP Homo sapiens 22813749; 22955616; 23112178 HeLa; HEK293; HepG2 High-throughput data ncRI-40108475 PVT1 NONHSAG051258 lncRNA ALKBH5 K7ER58 protein The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts;CLIPseq data were analysed by CLIPdb PAR-CLIP Homo sapiens 22681889 HEK293 High-throughput data ncRI-40113068 PVT1 NONHSAG051258 lncRNA CPSF5 O43809 protein We performed PAR-CLIP experiments for 3' end processing factors;CLIPseq data were analysed by CLIPdb PAR-CLIP Homo sapiens 22813749 HEK293 High-throughput data ncRI-40115906 PVT1 NONHSAG051258 lncRNA eIF4AIII P38919 protein CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex;CLIPseq data were analysed by CLIPdb CLIP-Seq Homo sapiens 23085716 HeLa High-throughput data ncRI-40120315 PVT1 NONHSAG051258 lncRNA hnRNPC P07910 protein Quantitative iCLIP reveals genome-wide competition of hnRNP C and U2AF65;CLIPseq data were analysed by CLIPdb eCLIP;iCLIP Homo sapiens 20601959; 22955616; 23374342 HeLa; HepG2 High-throughput data ncRI-40121610 PVT1 NONHSAG051258 lncRNA TDP-43 - protein CLIP-Seq of human brain and neuroblastoma sample to characterisethe RNA targets and position-dependent splicing regulation by TDP-43;CLIPseq data were analysed by CLIPdb iCLIP Homo sapiens 21358640 SH-SY5Y High-throughput data ncRI-40126410 PVT1 NONHSAG051258 lncRNA TARBP2 Q15633 protein Identify TARBP2 binding sites on endogenous RNA. HITS-CLIP Homo sapiens 25043050 MDA-LM2 High-throughput data ncRI-40136671 PVT1 NONHSAG051258 lncRNA RBM6 P78332 protein CLIP-Seq analysis of RBM5, RBM6 and RBM10, with 2 biological replicates and one non-specific control for each protein. CLIP-Seq Homo sapiens 24332178 HeLa High-throughput data ncRI-40145591 PVT1 NONHSAG051258 lncRNA RBM10 P98175 protein CLIP-Seq analysis of RBM5, RBM6 and RBM10, with 2 biological replicates and one non-specific control for each protein. CLIP-Seq Homo sapiens 24332178 HeLa High-throughput data ncRI-40154758 PVT1 NONHSAG051258 lncRNA MOV10 P22626 protein we demonstrate that MOV10 has an ATP-dependent 5 to 3 in vitro RNA unwinding activity and determine the RNA-binding sites of MOV10 and its helicase mutants using PAR-CLIP. CLIP;PAR-CLIP Homo sapiens 24726324; 26321680 HEK293; MDA-MB-231 High-throughput data ncRI-40163888 PVT1 NONHSAG051258 lncRNA UPF1 Q92900 protein PAR-CLIP of UPF1 reveals that MOV10 and UPF1 bind to RNA in close proximity. eCLIP;PAR-CLIP;CLIP Homo sapiens 22955616; 24726324; 27864472 HeLa; HEK293; K562 High-throughput data ncRI-40165550 PVT1 NONHSAG051258 lncRNA ZFP36 M0QY76 protein Global Target mRNA Specification and Regulation by RNA-Binding Protein ZFP36/Tristetraprolin/TTP. PAR-CLIP Homo sapiens 24401661 HEK293 High-throughput data ncRI-40190936 PVT1 NONHSAG051258 lncRNA hnRNPA2B1 O88569 protein Nuclear HNRNPA2B1 HITS-CLIP. HITS-CLIP Homo sapiens MDA-MB-231 High-throughput data ncRI-40298364 PVT1 NONHSAG051258 lncRNA hsa-mir-15a/15b/16/1 MI0000069 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40298757 PVT1 NONHSAG051258 lncRNA hsa-miR-15b-5p MI0000438 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40299155 PVT1 NONHSAG051258 lncRNA hsa-miR-16-1-3p MI0000070 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40302361 PVT1 NONHSAG051258 lncRNA hsa-miR-190a MI0000486 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40302510 PVT1 NONHSAG051258 lncRNA hsa-miR-190b MI0005545 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40303591 PVT1 NONHSAG051258 lncRNA hsa-miR-195-3p MI0000489 miRNA interactions between ncRNAs and miRNAs dual luciferase assay;Luciferase reporter assays;Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens 27813492; 28296507 Literature mining; TargetScan with Ago CLIP data ncRI-40306328 PVT1 NONHSAG051258 lncRNA hsa-miR-205-5p MI0000285 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40311225 PVT1 NONHSAG051258 lncRNA hsa-mir-24-1 MI0000080 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40312999 PVT1 NONHSAG051258 lncRNA hsa-miR-29a-5p MI0000087 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40313215 PVT1 NONHSAG051258 lncRNA hsa-mir-29b-2-5p MI0000107 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40313402 PVT1 NONHSAG051258 lncRNA hsa-mir-29c MI0000735 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40320505 PVT1 NONHSAG051258 lncRNA hsa-miR-335-3p MI0000816 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40328726 PVT1 NONHSAG051258 lncRNA hsa-miR-409-5p MI0001735 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40330151 PVT1 NONHSAG051258 lncRNA hsa-miR-424-5p MI0001446 miRNA interactions between ncRNAs and miRNAs Dual Luciferase Reporter Assay;RIP Assay;Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens 30861415 Literature mining; TargetScan with Ago CLIP data ncRI-40335410 PVT1 NONHSAG051258 lncRNA hsa-mir-488-3p MI0003123 miRNA interactions between ncRNAs and miRNAs RIP assay;Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset;Luciferase reporter assay Homo sapiens 28520497 Literature mining; TargetScan with Ago CLIP data ncRI-40336080 PVT1 NONHSAG051258 lncRNA hsa-miR-493-5p MI0003132 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40336977 PVT1 NONHSAG051258 lncRNA hsa-miR-497-3p MI0003138 miRNA interactions between ncRNAs and miRNAs RNA immunoprecipitation (RIP);Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset;Luciferase reporter assay Homo sapiens 29133127 Literature mining; TargetScan with Ago CLIP data ncRI-40341884 PVT1 NONHSAG051258 lncRNA hsa-miR-590-3p MI0003602 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40342028 PVT1 NONHSAG051258 lncRNA hsa-miR-6088 MI0020365 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40344458 PVT1 NONHSAG051258 lncRNA hsa-mir-6838 MI0022684 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40348456 PVT1 NONHSAG051258 lncRNA hsa-miR-96-5p MI0000098 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40358685 PVT1 NONHSAG051258 lncRNA hsa-mir-103a-2-5p MI0000108 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40359623 PVT1 NONHSAG051258 lncRNA hsa-mir-107 MI0000114 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40373186 PVT1 NONHSAG051258 lncRNA hsa-miR-200b-5p MI0000342 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40373344 PVT1 NONHSAG051258 lncRNA hsa-mir-200c-3p MI0000650 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40395290 PVT1 NONHSAG051258 lncRNA hsa-miR-429 MI0001641 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40401565 PVT1 NONHSAG051258 lncRNA hsa-miR-503-3p MI0003188 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40403286 PVT1 NONHSAG051258 lncRNA hsa-miR-520f MI0003146 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40418965 PVT1 NONHSAG099126 lncRNA BCCIP Q9P287 protein eCLIP experiment on HepG2 against BCCIP eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40420422 PVT1 NONHSAG099126 lncRNA BUD13 Q9BRD0 protein eCLIP experiment on HepG2 against BUD13 eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40423793 PVT1 NONHSAG099126 lncRNA CSTF2T Q9H0L4 protein eCLIP experiment on HepG2 against CSTF2T eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40424746 PVT1 NONHSAG099126 lncRNA DDX3X O00571 protein eCLIP experiment on HepG2 against DDX3X eCLIP;CLIP Homo sapiens 22955616; 27180681 K562; HepG2 High-throughput data ncRI-40426426 PVT1 NONHSAG099126 lncRNA DDX59 Q5T1V6 protein eCLIP experiment on HepG2 against DDX59 eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40426932 PVT1 NONHSAG099126 lncRNA DDX6 P26196 protein eCLIP experiment on HepG2 against DDX6 eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40428069 PVT1 NONHSAG099126 lncRNA DGCR8 Q8WYQ5 protein eCLIP experiment on HepG2 against DGCR8 eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40428729 PVT1 NONHSAG099126 lncRNA DHX30 Q7L2E3 protein eCLIP experiment on HepG2 against DHX30 eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40429085 PVT1 NONHSAG099126 lncRNA DKC1 O60832 protein eCLIP experiment on HepG2 against DKC1 eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40430848 PVT1 NONHSAG099126 lncRNA EIF3D O15371 protein eCLIP experiment on HepG2 against EIF3D eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40431826 PVT1 NONHSAG099126 lncRNA EIF3H O15372 protein eCLIP experiment on HepG2 against EIF3H eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40433361 PVT1 NONHSAG099126 lncRNA FAM120A Q9NZB2 protein eCLIP experiment on HepG2 against FAM120A eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40434586 PVT1 NONHSAG099126 lncRNA FAKD2 Q9NYY8 protein eCLIP experiment on HepG2 against FASTKD2 eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40434834 PVT1 NONHSAG099126 lncRNA TBRG4 Q969Z0 protein eCLIP experiment on HepG2 against TBRG4 eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40435318 PVT1 NONHSAG099126 lncRNA FKBP4 Q02790 protein eCLIP experiment on HepG2 against FKBP4 eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40435818 PVT1 NONHSAG099126 lncRNA FUBP3 Q96I24 protein eCLIP experiment on HepG2 against FUBP3 eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40436463 PVT1 NONHSAG099126 lncRNA GRSF1 Q12849 protein eCLIP experiment on HepG2 against GRSF1 eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40438722 PVT1 NONHSAG099126 lncRNA GRWD1 Q9BQ67 protein eCLIP experiment on HepG2 against GRWD1 eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40439831 PVT1 NONHSAG099126 lncRNA HNRNPUL1 Q9BUJ2 protein eCLIP experiment on HepG2 against HNRNPUL1 eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40443740 PVT1 NONHSAG099126 lncRNA HNRPK P61978 protein eCLIP experiment on HepG2 against HNRNPK eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40445457 PVT1 NONHSAG099126 lncRNA hnRNPL P14866 protein eCLIP experiment on HepG2 against HNRNPL eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40447884 PVT1 NONHSAG099126 lncRNA HNRNPU Q00839 protein eCLIP experiment on HepG2 against HNRNPU eCLIP Homo sapiens 22955616 K562; HepG2; adrenal gland High-throughput data ncRI-40449199 PVT1 NONHSAG099126 lncRNA IF2B1 Q9NZI8 protein eCLIP experiment on HepG2 against IGF2BP1 eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40450339 PVT1 NONHSAG099126 lncRNA IGF2BP3 O00425 protein eCLIP experiment on HepG2 against IGF2BP3 eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40451915 PVT1 NONHSAG099126 lncRNA ILF3 Q12906 protein eCLIP experiment on HepG2 against ILF3 eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40453313 PVT1 NONHSAG099126 lncRNA LARP4 Q71RC2 protein eCLIP experiment on HepG2 against LARP4 eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40454271 PVT1 NONHSAG099126 lncRNA LIN28B Q6ZN17 protein eCLIP experiment on HepG2 against LIN28B eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40455814 PVT1 NONHSAG099126 lncRNA LSM11 P83369 protein eCLIP experiment on HepG2 against LSM11 eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40456717 PVT1 NONHSAG099126 lncRNA MATR3 P43243 protein eCLIP experiment on HepG2 against MATR3 eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40458291 PVT1 NONHSAG099126 lncRNA NCBP2 P52298 protein eCLIP experiment on HepG2 against NCBP2 eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40459927 PVT1 NONHSAG099126 lncRNA NKRF O15226 protein eCLIP experiment on HepG2 against NKRF eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40460463 PVT1 NONHSAG099126 lncRNA NOL12 Q9UGY1 protein eCLIP experiment on HepG2 against NOL12 eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40462335 PVT1 NONHSAG099126 lncRNA PCBP2 Q15366 protein eCLIP experiment on HepG2 against PCBP2 eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40464148 PVT1 NONHSAG099126 lncRNA PPIG Q13427 protein eCLIP experiment on HepG2 against PPIG eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40465151 PVT1 NONHSAG099126 lncRNA PRP17 O60508 protein eCLIP experiment on HepG2 against CDC40 eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40466874 PVT1 NONHSAG099126 lncRNA PRPF8 Q6P2Q9 protein eCLIP experiment on HepG2 against PRPF8 eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40468421 PVT1 NONHSAG099126 lncRNA PTBP1 P26599 protein eCLIP experiment on HepG2 against PTBP1 eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40469755 PVT1 NONHSAG099126 lncRNA QKI Q96PU8 protein eCLIP experiment on HepG2 against QKI eCLIP;CLIP Homo sapiens 22955616; 29871889 K562; HepG2; Mesenchymal-like HMLE High-throughput data ncRI-40470887 PVT1 NONHSAG099126 lncRNA RBM15 Q96T37 protein eCLIP experiment on HepG2 against RBM15 eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40472008 PVT1 NONHSAG099126 lncRNA RBM22 Q9NW64 protein eCLIP experiment on HepG2 against RBM22 eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40473077 PVT1 NONHSAG099126 lncRNA RBM5 P52756 protein eCLIP experiment on HepG2 against RBM5 eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40474786 PVT1 NONHSAG099126 lncRNA TAF15 Q92804 protein eCLIP experiment on HepG2 against TAF15 eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40476451 PVT1 NONHSAG099126 lncRNA RNC Q9NRR4 protein eCLIP experiment on HepG2 against DROSHA eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40477382 PVT1 NONHSAG099126 lncRNA Ro60 P10155 protein eCLIP experiment on HepG2 against TROVE2 eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40480147 PVT1 NONHSAG099126 lncRNA RPB7 P62487 protein eCLIP experiment on HepG2 against POLR2G eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40482497 PVT1 NONHSAG099126 lncRNA SAP49 Q15427 protein eCLIP experiment on HepG2 against SF3B4 eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40483252 PVT1 NONHSAG099126 lncRNA PSF P23246 protein eCLIP experiment on HepG2 against SFPQ eCLIP;CLIP Homo sapiens 22955616; 28846091 HeLa; HepG2 High-throughput data ncRI-40483981 PVT1 NONHSAG099126 lncRNA SLTM Q9NWH9 protein eCLIP experiment on HepG2 against SLTM eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40484644 PVT1 NONHSAG099126 lncRNA SND1 Q7KZF4 protein eCLIP experiment on HepG2 against SND1 eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40485010 PVT1 NONHSAG099126 lncRNA SMNDC1 O75940 protein eCLIP experiment on HepG2 against SMNDC1 eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40487767 PVT1 NONHSAG099126 lncRNA SFRS7 Q16629 protein eCLIP experiment on HepG2 against SRSF7 eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40488998 PVT1 NONHSAG099126 lncRNA SRSF9 Q13242 protein eCLIP experiment on HepG2 against SRSF9 eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40490458 PVT1 NONHSAG099126 lncRNA SUGP2 Q8IX01 protein eCLIP experiment on HepG2 against SUGP2 eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40491014 PVT1 NONHSAG099126 lncRNA SUV3 Q8IYB8 protein eCLIP experiment on HepG2 against SUPV3L1 eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40491597 PVT1 NONHSAG099126 lncRNA TCP4 P53999 protein eCLIP experiment on HepG2 against SUB1 eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40493588 PVT1 NONHSAG099126 lncRNA TRA2A Q13595 protein eCLIP experiment on HepG2 against TRA2A eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40495405 PVT1 NONHSAG099126 lncRNA U2AF1 Q01081 protein eCLIP experiment on HepG2 against U2AF1 eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40497196 PVT1 NONHSAG099126 lncRNA U2AF2 P26368 protein eCLIP experiment on HepG2 against U2AF2 eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40498260 PVT1 NONHSAG099126 lncRNA U5S1 Q15029 protein eCLIP experiment on HepG2 against EFTUD2 eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40500331 PVT1 NONHSAG099126 lncRNA UCHL5 Q9Y5K5 protein eCLIP experiment on HepG2 against UCHL5 eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40501365 PVT1 NONHSAG099126 lncRNA XPO5 Q9HAV4 protein eCLIP experiment on HepG2 against XPO5 eCLIP Homo sapiens 22955616 HepG2 High-throughput data ncRI-40501990 PVT1 NONHSAG099126 lncRNA XRCC6 P12956 protein eCLIP experiment on HepG2 against XRCC6 eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40503188 PVT1 NONHSAG099126 lncRNA XRN2 Q9H0D6 protein eCLIP experiment on HepG2 against XRN2 eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40504782 PVT1 NONHSAG099126 lncRNA ZC11A O75152 protein eCLIP experiment on HepG2 against ZC3H11A eCLIP Homo sapiens 22955616 K562; HepG2 High-throughput data ncRI-40505347 PVT1 NONHSAG099126 lncRNA YWHAG P61981 protein eCLIP experiment on K562 against YWHAG eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40506447 PVT1 NONHSAG099126 lncRNA AGGF1 Q8N302 protein eCLIP experiment on K562 against AGGF1 eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40507494 PVT1 NONHSAG099126 lncRNA AKAP8L Q9ULX6 protein eCLIP experiment on K562 against AKAP8L eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40508857 PVT1 NONHSAG099126 lncRNA CPSF6 Q16630 protein eCLIP experiment on K562 against CPSF6 eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40510194 PVT1 NONHSAG099126 lncRNA DDX24 Q9GZR7 protein eCLIP experiment on K562 against DDX24 eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40511371 PVT1 NONHSAG099126 lncRNA DDX42 Q86XP3 protein eCLIP experiment on K562 against DDX42 eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40511782 PVT1 NONHSAG099126 lncRNA DDX55 Q8NHQ9 protein eCLIP experiment on K562 against DDX55 eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40514402 PVT1 NONHSAG099126 lncRNA EXOS5 Q9NQT4 protein eCLIP experiment on K562 against EXOSC5 eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40516290 PVT1 NONHSAG099126 lncRNA FMR1 Q06787 protein eCLIP experiment on K562 against FMR1 eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40517094 PVT1 NONHSAG099126 lncRNA FTO Q9C0B1 protein eCLIP experiment on K562 against FTO eCLIP;CLIP Homo sapiens 22955616 HEK293; K562 High-throughput data ncRI-40519158 PVT1 NONHSAG099126 lncRNA FUBP2 Q92945 protein eCLIP experiment on K562 against KHSRP eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40520175 PVT1 NONHSAG099126 lncRNA FXR1 P51114 protein eCLIP experiment on K562 against FXR1 eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40520868 PVT1 NONHSAG099126 lncRNA FXR2 P51116 protein eCLIP experiment on K562 against FXR2 eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40521646 PVT1 NONHSAG099126 lncRNA GEMI5 Q8TEQ6 protein eCLIP experiment on K562 against GEMIN5 eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40523854 PVT1 NONHSAG099126 lncRNA HLTF Q14527 protein eCLIP experiment on K562 against HLTF eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40529020 PVT1 NONHSAG099126 lncRNA IF2B2 Q9Y6M1 protein eCLIP experiment on K562 against IGF2BP2 eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40529839 PVT1 NONHSAG099126 lncRNA EIF4G2 P78344 protein eCLIP experiment on K562 against EIF4G2 eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40532278 PVT1 NONHSAG099126 lncRNA KHDR1 Q07666 protein eCLIP experiment on K562 against KHDRBS1 eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40534801 PVT1 NONHSAG099126 lncRNA METAP2 P50579 protein eCLIP experiment on K562 against METAP2 eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40536020 PVT1 NONHSAG099126 lncRNA NOLC1 Q14978 protein eCLIP experiment on K562 against NOLC1 eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40537286 PVT1 NONHSAG099126 lncRNA DBHS Q15233 protein eCLIP experiment on K562 against NONO eCLIP;CLIP Homo sapiens 22955616; 28846091 HeLa; K562 High-throughput data ncRI-40539028 PVT1 NONHSAG099126 lncRNA PAPD1 Q9NVV4 protein eCLIP experiment on K562 against MTPAP eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40540290 PVT1 NONHSAG099126 lncRNA PPIL4 Q8WUA2 protein eCLIP experiment on K562 against PPIL4 eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40541809 PVT1 NONHSAG099126 lncRNA PUM2 Q8TB72 protein eCLIP experiment on K562 against PUM2 eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40545517 PVT1 NONHSAG099126 lncRNA RBFOX2 O43251 protein eCLIP experiment on K562 against RBFOX2 eCLIP;CLIP Homo sapiens 22955616; 27068461 K562; H1ES High-throughput data ncRI-40547251 PVT1 NONHSAG099126 lncRNA RPS3 P23396 protein eCLIP experiment on K562 against RPS3 eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40549062 PVT1 NONHSAG099126 lncRNA SAFB2 Q14151 protein eCLIP experiment on K562 against SAFB2 eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40549475 PVT1 NONHSAG099126 lncRNA SAP155 O75533 protein eCLIP experiment on K562 against SF3B1 eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40554527 PVT1 NONHSAG099126 lncRNA T2FA P35269 protein eCLIP experiment on K562 against GTF2F1 eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40555624 PVT1 NONHSAG099126 lncRNA TARDBP Q13148 protein eCLIP experiment on K562 against TARDBP eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40562288 PVT1 NONHSAG099126 lncRNA YBOX3 P16989 protein eCLIP experiment on K562 against YBX3 eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40564204 PVT1 NONHSAG099126 lncRNA ZNF622 Q969S3 protein eCLIP experiment on K562 against ZNF622 eCLIP Homo sapiens 22955616 K562 High-throughput data ncRI-40579636 PVT1 NONHSAG099126 lncRNA EIF2C1 Q9UL18 protein derived from CLIP-seq dataset CLIP Homo sapiens C666 High-throughput data ncRI-40581265 PVT1 NONHSAG099126 lncRNA AGO2 Q9UKV8 protein derived from CLIP-seq dataset CLIP Homo sapiens C666 High-throughput data ncRI-40582894 PVT1 NONHSAG099126 lncRNA AGO3 Q9H9G7 protein derived from CLIP-seq dataset CLIP Homo sapiens C666 High-throughput data ncRI-40584523 PVT1 NONHSAG099126 lncRNA AGO4 Q9HCK5 protein derived from CLIP-seq dataset CLIP Homo sapiens C666 High-throughput data ncRI-40587290 PVT1 NONHSAG099126 lncRNA MSI1H O43347 protein derived from CLIP-seq dataset CLIP Homo sapiens 26100017 U251 High-throughput data ncRI-40590075 PVT1 NONHSAG099126 lncRNA LAR4B Q92615 protein derived from CLIP-seq dataset CLIP Homo sapiens 26001795 DMEM High-throughput data ncRI-40600750 PVT1 NONHSAG099126 lncRNA SPPL3 Q8TCT6 protein derived from CLIP-seq dataset CLIP Homo sapiens 27184842 MGG8 High-throughput data ncRI-40602490 PVT1 NONHSAG099126 lncRNA HNRPG P38159 protein derived from CLIP-seq dataset CLIP Homo sapiens 28334903 HEK293T High-throughput data ncRI-40603205 PVT1 NONHSAG099126 lncRNA YTDC1 Q96MU7 protein derived from CLIP-seq dataset CLIP Homo sapiens 28984244 HeLa High-throughput data ncRI-40603525 PVT1 NONHSAG099126 lncRNA MBNL1 Q9NR56 protein derived from CLIP-seq dataset CLIP Homo sapiens 26883358 MDA-MB-231 High-throughput data ncRI-40612056 PVT1 NONHSAG099126 lncRNA FBL P22087 protein derived from CLIP-seq dataset CLIP Homo sapiens 28031372 Flp-In 293 High-throughput data ncRI-40620845 PVT1 NONHSAG099126 lncRNA DDX54 Q8TDD1 protein derived from CLIP-seq dataset CLIP Homo sapiens 28596291 MCF7 High-throughput data ncRI-40630702 PVT1 NONHSAG099126 lncRNA HDAC9 Q9UKV0 protein derived from CLIP-seq dataset CLIP Homo sapiens 29520069 Aortic Smooth Muscle High-throughput data ncRI-40632143 PVT1 NONHSAG099126 lncRNA SMARCA4 P51532 protein derived from CLIP-seq dataset CLIP Homo sapiens 29520069 Aortic Smooth Muscle High-throughput data ncRI-40633559 PVT1 NONHSAG099126 lncRNA SSB P05455 protein derived from CLIP-seq dataset CLIP Homo sapiens 28793268 HEK293 High-throughput data ncRI-40750336 hsa-miR-3194-5p MI0014239 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 23824327 miRanda with Ago CLIP data ncRI-40755093 hsa-miR-423-3p MI0001445 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 23824327 miRanda with Ago CLIP data ncRI-40755314 hsa-miR-526b-3p MI0003150 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 23824327 miRanda with Ago CLIP data ncRI-40756649 hsa-miR-3184-5p MI0014226 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 23824327 miRanda with Ago CLIP data ncRI-40757104 hsa-miR-484 MI0002468 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 23824327 miRanda with Ago CLIP data ncRI-40758508 hsa-miR-181a-2-3p MI0000269 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 23824327 miRanda with Ago CLIP data ncRI-40760927 hsa-miR-224-3p MI0000301 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 23824327 miRanda with Ago CLIP data ncRI-40764330 hsa-miR-504-5p MI0003189 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 23824327 miRanda with Ago CLIP data ncRI-40764616 hsa-miR-24-2-5p MI0000081 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 23824327 miRanda with Ago CLIP data ncRI-40764915 hsa-miR-3155a MI0014183 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 23824327 miRanda with Ago CLIP data ncRI-40765025 hsa-miR-4269 MI0015875 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 23824327 miRanda with Ago CLIP data ncRI-40767798 hsa-miR-548s MI0014141 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 23824327 miRanda with Ago CLIP data ncRI-40768756 hsa-miR-1237-3p MI0006327 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 23824327 miRanda with Ago CLIP data ncRI-40768841 hsa-miR-658 MI0003682 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 23824327 miRanda with Ago CLIP data ncRI-40951358 hsa-miR-3193 MI0014238 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 28735896 tumor miRanda with Ago CLIP data ncRI-40952948 hsa-miR-4329 MI0015901 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 28735896 tumor miRanda with Ago CLIP data ncRI-40955883 hsa-miR-519c-3p MI0003148 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 28735896 tumor miRanda with Ago CLIP data ncRI-40956380 hsa-miR-519a-3p MI0003178 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 28735896 tumor miRanda with Ago CLIP data ncRI-40956453 hsa-miR-1205 MI0006338 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 28735896 tumor miRanda with Ago CLIP data ncRI-40957127 hsa-miR-1911-3p MI0008332 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 28735896 tumor miRanda with Ago CLIP data ncRI-40957247 hsa-miR-518f-3p MI0003154 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 28735896 tumor miRanda with Ago CLIP data ncRI-40957705 hsa-miR-522-3p MI0003177 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 28735896 tumor miRanda with Ago CLIP data ncRI-40958310 hsa-miR-625-3p MI0003639 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 28735896 tumor miRanda with Ago CLIP data ncRI-40958990 hsa-miR-589-3p MI0003599 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 28735896 tumor miRanda with Ago CLIP data ncRI-40959263 hsa-miR-523-3p MI0003153 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 28735896 tumor miRanda with Ago CLIP data ncRI-40959544 hsa-miR-873-5p MI0005564 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 28735896 tumor miRanda with Ago CLIP data ncRI-40959714 hsa-miR-520c-3p MI0003158 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 28735896 tumor miRanda with Ago CLIP data ncRI-40960365 hsa-miR-627-5p MI0003641 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 28735896 tumor miRanda with Ago CLIP data ncRI-40960544 hsa-miR-526a-5p MI0003157 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 28735896 tumor miRanda with Ago CLIP data ncRI-40962032 hsa-miR-518d-3p MI0003171 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 28735896 tumor miRanda with Ago CLIP data ncRI-40962931 hsa-miR-761 MI0003941 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 28735896 tumor miRanda with Ago CLIP data ncRI-40964281 hsa-miR-140-3p MI0000456 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 28735896 tumor miRanda with Ago CLIP data ncRI-40964435 hsa-miR-519b-3p MI0003151 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 28735896 tumor miRanda with Ago CLIP data ncRI-40964694 hsa-miR-4291 MI0015900 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 28735896 tumor miRanda with Ago CLIP data ncRI-40965101 hsa-miR-518e-3p MI0003169 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 28735896 tumor miRanda with Ago CLIP data ncRI-40967466 hsa-miR-92a-2-5p MI0000094 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 28735896 tumor miRanda with Ago CLIP data ncRI-40968005 hsa-miR-214-3p MI0000290 miRNA PVT1 NONHSAG099126 lncRNA Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset AGO CLIP Homo sapiens 28735896 tumor miRanda with Ago CLIP data ncRI-40969286 PVT1 NONHSAG099126 lncRNA hsa-mir-448 MI0001637 miRNA PVT1 functions as an endogenous sponge by competing for miR-448 binding to regulate the miRNA target SERBP1 dual luciferase;Dual luciferase reporter assay;dual luciferase reporter assay;RNA-pulldown;RNA-binding protein immunoprecipitation (RIP) Homo sapiens 28657147 HEK293T; SW1990 Literature mining ncRI-40969323 PVT1 NONHSAG099126 lncRNA Ezh2 Q15910 protein The RIP assay found that endogenous PVT1 was highly enriched by EZH2 RIP compared with that of the negative control RNA immunoprecipitation (RIP) assay;RIP assay;RNA immunoprecipitation (RIP);RNA pull down assay Homo sapiens 28296507; 28800314; 29286144 CaSki; SMMC7721; SiHa; SK-MEL-5 Literature mining ncRI-40969443 PVT1 NONHSAG099126 lncRNA rno-miR-146b-5p MI0000462 miRNA PVT1 Regulates the Expression of CD151 and FGF2 via miR-152 Luciferase reporter assays;Dual-Luciferase Reporter Assay Homo sapiens 28258379; 30661902 HEK293; SGC7901 Literature mining ncRI-40969610 PVT1 NONHSAG099126 lncRNA TNF Q5STB3 protein interaction of PVT1 and TNF-α RNA immunoprecipitation (RIP) assay Homo sapiens 28391160 HK-2 Literature mining ncRI-40969614 PVT1 NONHSAG099126 lncRNA hsa-mir-186-3p MI0000483 miRNA PVT1 interacted with miR-186-5p and functioned as its sponge in HCC cells Luciferase reporter assays;dual-luciferase assay;RNA immunoprecipitation assay Homo sapiens 28122299; 28656879 BGC823; SK-HEP-1 Literature mining ncRI-40969645 PVT1 NONHSAG099126 lncRNA FOXM1 Q08050 protein PVT1 interacts with FOXM1 and elevates its protein expression in gastric cancer cells RNA-protein pull-down assays;LS/MS mass spectrometric;RIP assays Homo sapiens 27756785 HEK293T; HGC-27 Literature mining ncRI-40970177 PVT1 NONHSAG099126 lncRNA miR-128-3p MI0000447 miRNA PVT1 acts as s sponge for miR-128-3p to facilitate Sp1 expression RNA immunoprecipitation (RIP);Luciferase activity assay Homo sapiens 30894138 human atrial muscle tissues Literature mining ncRI-40970219 PVT1 NONHSAG099126 lncRNA hsa-miR-149-3p MI0000478 miRNA PVT1 directly interacts with miR-149 Luciferase reporter assay;Pull-down assay Homo sapiens 30126849 Chondrocytes Literature mining ncRI-40970220 PVT1 NONHSAG099126 lncRNA hsa-mir-150 MI0000479 miRNA PVT1 directly targeted miR-150 Dual luciferase reporter assay;Western blot Homo sapiens 30205391 HepG2; BEL-7402 Literature mining ncRI-40970221 PVT1 NONHSAG099126 lncRNA HIG2 ENSG00000135245 protein PVT1 up-regulated the expression of HIG2 via targeting miR-150 Dual luciferase reporter assay;Western blot Homo sapiens 30205392 HepG2; BEL-7402 Literature mining ncRI-40970222 PVT1 NONHSAG099126 lncRNA ANGPTL4 ENSG00000167772 protein PVT1 Binds with EZH2 to Coregulate Target Genes, Especially ANGPTL4 Double Fluorescence Detection;RIP Assays Homo sapiens 30388624 HuCCT1 Literature mining ncRI-40970223 PVT1 NONHSAG099126 lncRNA hsa-miR-143-3p MI0000459 miRNA PVT1 binds to miR-143 and suppresses its expression Luciferase reporter assay;RNA immunoprecipitation (RIP) assay;RNA pull-down assay Homo sapiens 30825877 NOZ; GBC-SD Literature mining ncRI-40970224 PVT1 NONHSAG099126 lncRNA HK2 ENSG00000159399 protein PVT1 plays a ceRNA role in regulating HK2 expression by sponging miR-143 Luciferase reporter assay;RNA immunoprecipitation (RIP) assay;RNA pull-down assay Homo sapiens 30825877 NOZ; GBC-SD Literature mining ncRI-40970265 PVT1 NONHSAG099126 lncRNA EZH2 ENSG00000106462 protein PVT1 improved EZH2 protein stability RNA immunoprecipitation (RIP) assay;RNA pull-down assay Homo sapiens 30008615 HepG2; Huh7 Literature mining ncRI-40970518 PVT1 NONHSAG099126 lncRNA EZH2 S4S3R8 protein lncRNA PVT1 may contribute to tumorigenesis of thyroid cancer through recruiting EZH2 and regulating TSHR expression RIP,ChIP Homo sapiens 26427660 Literature mining ncRI-40970519 PVT1 NONHSAG099126 lncRNA TSHR A0A0A0MTJ0 protein lncRNA PVT1 may contribute to tumorigenesis of thyroid cancer through recruiting EZH2 and regulating TSHR expression RIP,ChIP Homo sapiens 26427660 Literature mining ncRI-40970551 PVT1 NONHSAG099126 lncRNA p15INK4B K7PPU3 protein PVT1 is required to target EZH2 occupancy and activity to epigenetically regulate the expression of p15 and p16 Co-IP,RIP Homo sapiens 25890171 GES-1 Literature mining ncRI-40970552 PVT1 NONHSAG099126 lncRNA p16INK4A K7PML8 protein PVT1 is required to target EZH2 occupancy and activity to epigenetically regulate the expression of p15 and p16 Co-IP,RIP Homo sapiens 25890171 GES-1 Literature mining ncRI-40995725 TINCR NONHSAG024566.2 lncRNA PVT1 NONHSAG099126.2 lncRNA RNA-RNA interaction from RISE database RIAseq Homo sapiens 25259926 Keratinocytes RISE database ncRI-41006594 PVT1 NONHSAG099126.2 lncRNA SCUBE3 ENSG00000146197 mRNA RNA-RNA interaction from RISE database PARIS Homo sapiens 27180905 HEK293T RISE database ncRI-50002165 PVT1 lncRNA TRIM25 Q14258 protein binding derived from CLIP-seq dataset(GSE104949) CLIP-seq Homo sapiens 29117863 HeLa High-throughput data ncRI-50008641 PVT1 lncRNA DHX36 Q9H2U1 protein binding derived from CLIP-seq dataset(GSE105171); DHX36-iso1 E335A overexpression PAR-CLIP Homo sapiens 31160600 HEK293 High-throughput data ncRI-50013927 PVT1 lncRNA DHX36 Q9H2U1 protein binding derived from CLIP-seq dataset(GSE105171); DHX36-iso2 overexpression PAR-CLIP Homo sapiens 31160600 HEK293 High-throughput data ncRI-50018009 PVT1 lncRNA WDR4 P57081 protein binding derived from CLIP-seq dataset(GSE112276) PAR-CLIP Homo sapiens 31031084 HeLa High-throughput data ncRI-50018717 PVT1 lncRNA DDX6 P26196 protein binding derived from CLIP-seq dataset(GSE112782) eCLIP Homo sapiens 31588046 GEN1C High-throughput data ncRI-50019261 PVT1 lncRNA ILF2 Q12905 protein binding derived from CLIP-seq dataset(GSE112782) eCLIP Homo sapiens 31588046 H1 High-throughput data ncRI-50019605 PVT1 lncRNA FUS P35637 protein binding derived from CLIP-seq dataset(GSE112782) eCLIP Homo sapiens 31588046 H1 High-throughput data ncRI-50020118 PVT1 lncRNA DCP1B Q8IZD4 protein binding derived from CLIP-seq dataset(GSE112782) eCLIP Homo sapiens 31588046 H1 High-throughput data ncRI-50021471 PVT1 lncRNA HNRNPM P52272 protein binding derived from CLIP-seq dataset(GSE113783) eCLIP Homo sapiens LNCaP High-throughput data ncRI-50023184 PVT1 lncRNA RBMX P38159 protein binding derived from CLIP-seq dataset(GSE114311) PAR-CLIP Homo sapiens 31445886 HEK293T High-throughput data ncRI-50023472 PVT1 lncRNA RBM39 Q14498 protein binding derived from CLIP-seq dataset(GSE114558) PAR-CLIP Homo sapiens 30799057 Molm13 High-throughput data ncRI-50030636 PVT1 lncRNA SOX2 P48431 protein binding derived from CLIP-seq dataset(GSE115273) PAR-CLIP Homo sapiens 32016422 HEK293T High-throughput data ncRI-50031655 PVT1 lncRNA RBMX P38159 protein binding derived from CLIP-seq dataset(GSE115429) CLIP-seq Homo sapiens 30150775 HCT116 High-throughput data ncRI-50032193 PVT1 lncRNA FUBP1 Q96AE4 protein binding derived from CLIP-seq dataset(GSE115429) CLIP-seq Homo sapiens 30150775 HCT116 High-throughput data ncRI-50032616 PVT1 lncRNA FUBP3 Q96I24 protein binding derived from CLIP-seq dataset(GSE115429) CLIP-seq Homo sapiens 30150775 HCT116 High-throughput data ncRI-50032739 PVT1 lncRNA PUM1 Q14671 protein binding derived from CLIP-seq dataset(GSE115429) CLIP-seq Homo sapiens 30150775 HCT116 High-throughput data ncRI-50032962 PVT1 lncRNA hnRNPA1 P09651 protein binding derived from CLIP-seq dataset(GSE115442) eCLIP Homo sapiens 30042133 K562 High-throughput data ncRI-50033622 PVT1 lncRNA CNOT7 Q9UIV1 protein binding derived from CLIP-seq dataset(GSE117290) eCLIP Homo sapiens 32807991 HEK293T High-throughput data ncRI-50034141 PVT1 lncRNA AIMP1 Q12904 protein binding derived from CLIP-seq dataset(GSE117290) eCLIP Homo sapiens 32807991 HEK293T High-throughput data ncRI-50035153 PVT1 lncRNA DDX6 P26196 protein binding derived from CLIP-seq dataset(GSE117290) eCLIP Homo sapiens 32807991 HEK293T High-throughput data ncRI-50035792 PVT1 lncRNA MEX3C Q5U5Q3 protein binding derived from CLIP-seq dataset(GSE117290) eCLIP Homo sapiens 32807991 HEK293T High-throughput data ncRI-50036830 PVT1 lncRNA SNRPA P09012 protein binding derived from CLIP-seq dataset(GSE117290) eCLIP Homo sapiens 32807991 HEK293T High-throughput data ncRI-50037479 PVT1 lncRNA BOLL Q8N9W6 protein binding derived from CLIP-seq dataset(GSE117290) eCLIP Homo sapiens 32807991 HEK293T High-throughput data ncRI-50038401 PVT1 lncRNA IFIT2 P09913 protein binding derived from CLIP-seq dataset(GSE117290) eCLIP Homo sapiens 32807991 HEK293T High-throughput data ncRI-50038860 PVT1 lncRNA NANOS3 P60323 protein binding derived from CLIP-seq dataset(GSE117290) eCLIP Homo sapiens 32807991 HEK293T High-throughput data ncRI-50039814 PVT1 lncRNA TOB1 P50616 protein binding derived from CLIP-seq dataset(GSE117290) eCLIP Homo sapiens 32807991 HEK293T High-throughput data ncRI-50041772 PVT1 lncRNA EXOSC10 Q01780 protein binding derived from CLIP-seq dataset(GSE120574) iCLIP Homo sapiens 30840897 HEK293T High-throughput data ncRI-50043144 PVT1 lncRNA SCAF8 Q9UPN6 protein binding derived from CLIP-seq dataset(GSE121821); SCAF8 in chromatin fractions PAR-CLIP Homo sapiens 31104839 Flp-In T-REx 293 High-throughput data ncRI-50043685 PVT1 lncRNA PUS10 Q3MIT2 protein binding derived from CLIP-seq dataset(GSE124558) PAR-CLIP Homo sapiens 31819270 HEK293T High-throughput data ncRI-50044455 PVT1 lncRNA U2AF1 Q01081 protein binding derived from CLIP-seq dataset(GSE126912); U2AF1-S34F in Cytoplasmic fractions PAR-CLIP Homo sapiens 30842218 Flp-In-293 High-throughput data ncRI-50044905 PVT1 lncRNA U2AF1 Q01081 protein binding derived from CLIP-seq dataset(GSE126912); U2AF1 in Cytoplasmic fractions PAR-CLIP Homo sapiens 30842218 Flp-In-293 High-throughput data ncRI-50045575 PVT1 lncRNA SRSF1 Q07955 protein binding derived from CLIP-seq dataset(GSE130867) HITS-CLIP Homo sapiens 31300274 H1299 High-throughput data ncRI-50046477 PVT1 lncRNA Rbfox2 O43251 protein binding derived from CLIP-seq dataset(GSE131210) easyCLIP Homo sapiens 33692367 HEK293T High-throughput data ncRI-50047010 PVT1 lncRNA hnRNPD Q14103 protein binding derived from CLIP-seq dataset(GSE131210) easyCLIP Homo sapiens 33692367 HEK293T High-throughput data ncRI-50047610 PVT1 lncRNA Rbfox1 Q9NWB1 protein binding derived from CLIP-seq dataset(GSE131210) easyCLIP Homo sapiens 33692367 HEK293T High-throughput data ncRI-50048006 PVT1 lncRNA PCBP1 Q15365 protein binding derived from CLIP-seq dataset(GSE131210); easyCLIP PCBP1-100Q easyCLIP Homo sapiens 33692367 HCT116 High-throughput data ncRI-50048219 PVT1 lncRNA PCBP1 Q15365 protein binding derived from CLIP-seq dataset(GSE131210); easyCLIP PCBP1-100P easyCLIP Homo sapiens 33692367 HCT116 High-throughput data ncRI-50048909 PVT1 lncRNA SRSF1 Q07955 protein binding derived from CLIP-seq dataset(GSE131745) HITS-CLIP Homo sapiens 31300274 MDA-LM2 High-throughput data ncRI-50049240 PVT1 lncRNA EXOSC4 Q9NPD3 protein binding derived from CLIP-seq dataset(GSE132466) PAR-iCLIP Homo sapiens 31308215 H1 High-throughput data ncRI-50049452 PVT1 lncRNA YBX1 P67809 protein binding derived from CLIP-seq dataset(GSE133620) PAR-CLIP Homo sapiens 31358969 T24 High-throughput data ncRI-50049967 PVT1 lncRNA ELAVL1 Q15717 protein binding derived from CLIP-seq dataset(GSE133620) PAR-CLIP Homo sapiens 31358969 T24 High-throughput data ncRI-50050243 PVT1 lncRNA ALYREF Q86V81 protein binding derived from CLIP-seq dataset(GSE133620) PAR-CLIP Homo sapiens 31358969 T24 High-throughput data ncRI-50051663 PVT1 lncRNA AGO1 Q9UL18 protein binding derived from CLIP-seq dataset(GSE136907); cell treat with Hypoxia iCLIP Homo sapiens Human microvascular endothelial cells High-throughput data ncRI-50052998 PVT1 lncRNA AGO1 Q9UL18 protein binding derived from CLIP-seq dataset(GSE136907); cell treat with Normoxia iCLIP Homo sapiens Human microvascular endothelial cells High-throughput data ncRI-50053657 PVT1 lncRNA YTHDF2 Q9Y5A9 protein binding derived from CLIP-seq dataset(GSE137258); MYC-ER HMEC eCLIP-seq Homo sapiens HMEC High-throughput data ncRI-50054147 PVT1 lncRNA YTHDF2 Q9Y5A9 protein binding derived from CLIP-seq dataset(GSE137258); MYC-ER HMEC treat with 4-Hydroxytamoxifen eCLIP-seq Homo sapiens HMEC High-throughput data ncRI-50054668 PVT1 lncRNA YTHDF2 Q9Y5A9 protein binding derived from CLIP-seq dataset(GSE137258) eCLIP-seq Homo sapiens MDA-MB-231-LM2 High-throughput data ncRI-50055530 PVT1 lncRNA HNRNPH1 P31943 protein binding derived from CLIP-seq dataset(GSE137526) eCLIP Homo sapiens 32504554 A375 High-throughput data ncRI-50063769 PVT1 lncRNA IGF2BP1 Q9NZI8 protein binding derived from CLIP-seq dataset(GSE138063) PAR-CLIP Homo sapiens 31768017 K562 CML-derived cell line High-throughput data ncRI-50073210 PVT1 lncRNA IGF2BP3 O00425 protein binding derived from CLIP-seq dataset(GSE138063) PAR-CLIP Homo sapiens 31768017 K562 CML-derived cell line High-throughput data ncRI-50074164 PVT1 lncRNA HNRNPU Q00839 protein binding derived from CLIP-seq dataset(GSE138649) MY-CLIP Homo sapiens 32302342 HeLa High-throughput data ncRI-50074611 PVT1 lncRNA HNRNPC P07910 protein binding derived from CLIP-seq dataset(GSE138649) MY-CLIP Homo sapiens 32302342 HeLa High-throughput data ncRI-50075011 PVT1 lncRNA HNRNPU Q00839 protein binding derived from CLIP-seq dataset(GSE138661); whole cell lysate MY-CLIP Homo sapiens 32302342 HeLa High-throughput data ncRI-50077349 PVT1 lncRNA ZC3HAV1 Q7Z2W4 protein binding derived from CLIP-seq dataset(GSE139667) PAR-CLIP Homo sapiens 31719195 HEK293T High-throughput data ncRI-50082852 PVT1 lncRNA ZMAT3 Q9HA38 protein binding derived from CLIP-seq dataset(GSE150715); cell treat with DMSO PAR-CLIP Homo sapiens 33334821 HCT116 High-throughput data ncRI-50086550 PVT1 lncRNA ZMAT3 Q9HA38 protein binding derived from CLIP-seq dataset(GSE150715); cell treat with Nutlin-3a PAR-CLIP Homo sapiens 33334821 HCT116 High-throughput data ncRI-50086839 PVT1 lncRNA YBX1 P67809 protein binding derived from CLIP-seq dataset(GSE150925) PAR-CLIP Homo sapiens 32585856 HEK293 High-throughput data ncRI-50088078 PVT1 lncRNA A1CF Q9NQ94 protein binding derived from CLIP-seq dataset(GSE154168) easyCLIP Homo sapiens 33692367 HEK293T High-throughput data ncRI-50089475 PVT1 lncRNA A1CF Q9NQ94 protein binding derived from CLIP-seq dataset(GSE154168); easyCLIP A1CF-E34K easyCLIP Homo sapiens 33692367 HEK293T High-throughput data ncRI-50090168 PVT1 lncRNA CRNKL1 Q9BZJ0 protein binding derived from CLIP-seq dataset(GSE154168) easyCLIP Homo sapiens 33692367 HEK293T High-throughput data ncRI-50091379 PVT1 lncRNA FUBP1 Q96AE4 protein binding derived from CLIP-seq dataset(GSE154168) easyCLIP Homo sapiens 33692367 HEK293T High-throughput data ncRI-50092126 PVT1 lncRNA FUBP1 Q96AE4 protein binding derived from CLIP-seq dataset(GSE154168); easyCLIP FUBP1-R429C easyCLIP Homo sapiens 33692367 HEK293T High-throughput data ncRI-50093594 PVT1 lncRNA KHDRBS2 Q5VWX1 protein binding derived from CLIP-seq dataset(GSE154168) easyCLIP Homo sapiens 33692367 HEK293T High-throughput data ncRI-50095454 PVT1 lncRNA KHDRBS2 Q5VWX1 protein binding derived from CLIP-seq dataset(GSE154168); easyCLIP KHDRBS2-R168C easyCLIP Homo sapiens 33692367 HEK293T High-throughput data ncRI-50097430 PVT1 lncRNA TIA1 P31483 protein binding derived from CLIP-seq dataset(GSE155728) eCLIP Homo sapiens 33963355 HEK293T High-throughput data ncRI-50097831 PVT1 lncRNA SERBP1 Q8NC51 protein binding derived from CLIP-seq dataset(GSE156015) eCLIP Homo sapiens 33471508 HeLa High-throughput data ncRI-50099481 PVT1 lncRNA AGO2 Q9UKV8 protein binding derived from CLIP-seq dataset(GSE163925) fCLIP Homo sapiens 33503264 Flp-In T-REx 293 High-throughput data ncRI-50100920 PVT1 lncRNA AGO2 Q9UKV8 protein binding derived from CLIP-seq dataset(GSE163925) fPARCLIP Homo sapiens 33503264 Flp-In T-REx 293 High-throughput data ncRI-50101294 PVT1 lncRNA CPSF1 Q10570 protein binding derived from CLIP-seq dataset(GSE163925) fPARCLIP Homo sapiens 33503264 Flp-In T-REx 293 High-throughput data ncRI-50102915 PVT1 lncRNA KHSRP Q92945 protein binding derived from CLIP-seq dataset(GSE163925) fPARCLIP Homo sapiens 33503264 Flp-In T-REx 293 High-throughput data ncRI-50105485 PVT1 lncRNA SP1 P08047 protein binding derived from CLIP-seq dataset(GSE165739) iCLIP Homo sapiens HEK293 High-throughput data ncRI-50107040 PVT1 lncRNA CPSF1 Q10570 protein binding derived from CLIP-seq dataset(GSE165739) iCLIP Homo sapiens HEK293 High-throughput data ncRI-50108763 PVT1 lncRNA CPSF7 Q8N684 protein binding derived from CLIP-seq dataset(GSE165739) iCLIP Homo sapiens HEK293 High-throughput data ncRI-50110391 PVT1 lncRNA USF2 Q15853 protein binding derived from CLIP-seq dataset(GSE165739) iCLIP Homo sapiens HEK293 High-throughput data ncRI-50112013 PVT1 lncRNA DR1 Q01658 protein binding derived from CLIP-seq dataset(GSE173628) HITS-CLIP Homo sapiens 34559986 MCF7 High-throughput data ncRI-50112286 PVT1 lncRNA PRPF39 Q86UA1 protein binding derived from CLIP-seq dataset(GSE180686) eclip Homo sapiens HepG2 High-throughput data ncRI-50113690 PVT1 lncRNA EWSR1 Q01844 protein binding derived from CLIP-seq dataset(GSE98836) HITS-CLIP Homo sapiens HeLa High-throughput data ncRI-50114439 PVT1 lncRNA AGO2 Q9UKV8 protein binding derived from CLIP-seq dataset(GSE99686) HITS-CLIP Homo sapiens 30742093 HUAEC High-throughput data ncRI-50115246 PVT1 lncRNA AGO2 Q9UKV8 protein binding derived from CLIP-seq dataset(GSE99686) HITS-CLIP Homo sapiens 30742093 HUVEC High-throughput data ncRI-50115739 PVT1 lncRNA PTBP1 P26599 protein binding derived from CLIP-seq dataset(GSE111406); GoldCLIP_PTB_UVC GoldCLIP Homo sapiens 29709556 HEK293T High-throughput data ncRI-50116022 PVT1 lncRNA ICP27 - protein binding derived from CLIP-seq dataset(GSE128753); herpes simplex virus type 1 (HSV-1) ICP27 protein; HSV-1 infected Hela eCLIP Homo sapiens 31941886 HeLa High-throughput data ncRI-50116575 PVT1 lncRNA ICP27 - protein binding derived from CLIP-seq dataset(GSE128753); herpes simplex virus type 1 (HSV-1) ICP27 protein; ICP27 overexpressed Hela eCLIP Homo sapiens 31941886 HeLa High-throughput data ncRI-51487415 miR-216b MI0005569 miRNA PVT1 NONHSAG099126 lncRNA In addition, miR-216b interacted with PVT1 or Beclin-1. Luciferase reporter assay; RIP Homo sapiens 30859368 Literature mining ncRI-51487418 miR-361-3p MI0000760 miRNA PVT1 NONHSAG099126 lncRNA MiR-361-3p was a target of PVT1 in NSCLC cells. dual-luciferase reporter; RIP Homo sapiens 32197208 Literature mining ncRI-51487434 PVT1 NONHSAG099126 lncRNA EZH2 A0A090N8E9 protein PVT1 was able to bind EZH2 and obstruct the recruitment of EZH2 to the promoter of MYC therefore promoting MYC expression by altering H3K37me3 status in Hep3B liver cancer cells, and EZH2 protein was negatively correlated with lncRNA‑PVT1 expression. RIP Homo sapiens 31894346 Literature mining ncRI-51487472 miR-214-3p MI0000290 miRNA PVT1 NONHSAG099126 lncRNA Mechanistically, PVT1 acted as the 'miRNA sponge' to target miR-214-3p/MMP2 axis. Luciferase reporter assay Homo sapiens 31755246 Literature mining ncRI-51487480 miR-26b MI0000084 miRNA PVT1 NONHSAG099126 lncRNA PVT1 acted as a sponge for miR-26b to facilitate CTGF expression. FISH; RIP; RNA-pull down; luciferase reporter assays Homo sapiens 31625803 Literature mining ncRI-51487500 PVT1 NONHSAG099126 lncRNA UPF1 Q92900 protein The interaction between PVT1 and UPF1 was identified in the RIP assay RIP Homo sapiens 31696483 Literature mining ncRI-51487568 miR-145 MI0000461 miRNA PVT1 NONHSAG099126 lncRNA lncRNA PVT1 could bind to miR-145 and regulate its expression, and FSCN1 is a target gene of miR-145. FISH; dual?luciferase reporter gene assay Homo sapiens 31369196 Literature mining ncRI-51487689 miR-140-5p MI0000456 miRNA PVT1 NONHSAG099126 lncRNA PVT1 could bind directly with miR-140-5p, and Smad3 was a downstream target of miR-140-5p. luciferase assays Homo sapiens 31626590 Literature mining ncRI-51487715 PVT1 NONHSAG099126 lncRNA miR-424 MI0001446 miRNA Based on the negative correlation between PVT1 and miR-424, we then confirmed the direct interaction between PVT1 and miR-424 using RNA immunoprecipitation (RIP) and luciferase reporter assays. RIP; luciferase reporter assays Homo sapiens 30832754 Literature mining ncRI-51487871 miR-214-3p MI0000290 miRNA PVT1 NONHSAG099126 lncRNA Next the dual luciferase reporter gene assay, RNA pull-down, and RNA immunoprecipitation assays verified lncRNA PVT1 to be a competitive endogenous RNA (ceRNA) against miR-214-3p, and IRS1 was found to be a target of miR-214-3p. dual luciferase reporter gene assay; RNA pull-down; RNA immunoprecipitation assays Homo sapiens 31125260 Literature mining ncRI-51488606 PVT1 NONHSAG099126 lncRNA miR-519d-3p MI0003162 miRNA PVT1 could act as an oncogenic lncRNA, and promote tumor progression by regulating HIF-1A via competing with miR-519d-3p. RIP; RNA pulldown; luciferase assay Homo sapiens 32201527 Literature mining ncRI-51488679 PVT1 NONHSAG099126 lncRNA miR-543 MI0005565 miRNA Knockdown of PVT1 repressed breast cancer cell growth and motility, and induced apoptosis in vitro and reduced tumor volume and weight in vivo. Mechanically, the overexpression of PVT1 enhanced TRPS1 level by negatively targeted miR-543 in breast cancer. dual-luciferase reporter analysis; RNA immunoprecipitation (RIP); RNA pull down assays Homo sapiens 32982402 Literature mining ncRI-51488888 PVT1 NONHSAG099126 lncRNA miR-17-5p MI0000071 miRNA PVT1 was validated as a sponge to miR-17-5p and BAMBI was a direct target of miR-17-5p. PVT1 promoted cell viability, migrated and invaded abilities but repressed apoptotic rate by targeting BAMBI. MiR-17-5p regulated cell behaviors mediated by PVT1. PVT1 silencing decreased BAMBI expression by sponging miR-17-5p. dual-luciferase reporter assay; RNA pull-down assay Homo sapiens 32021261 Literature mining ncRI-51489144 miR-3619-5p MI0016009 miRNA PVT1 NONHSAG099126 lncRNA PVT1 silencing attenuated the DPP resistance in GC by downregulating TBL1XR1 via sponging miR-3619-5p. Dual-luciferase reporter assay Homo sapiens 32407172 Literature mining ncRI-51489229 miR-186 MI0000483 miRNA PVT1 NONHSAG099126 lncRNA SOX2 down-regulated miR-186 through the transcriptional activation of lncRNA PVT1, whereas elevating SEMA4D expression, thus promoting the progression of CCA Dual luciferase reporter gene assay Homo sapiens 32812642 Literature mining ncRI-51489377 miR-619-5p MI0003633 miRNA PVT1 NONHSAG099126 lncRNA LncRNA PVT1 promotes gemcitabine resistance of pancreatic cancer via activating Wnt/β-catenin and autophagy pathway through modulating the miR-619-5p/Pygo2 and miR-619-5p/ATG14 axes Dual-luciferase reporter assay Homo sapiens 32727463 Literature mining ncRI-51489378 miR-619-5p MI0003633 miRNA PVT1 NONHSAG099126 lncRNA LncRNA PVT1 promotes gemcitabine resistance of pancreatic cancer via activating Wnt/β-catenin and autophagy pathway through modulating the miR-619-5p/Pygo2 and miR-619-5p/ATG14 axes Dual-luciferase reporter assay Homo sapiens 32727463 Literature mining ncRI-51489590 miR-145-5p MI0000461 miRNA PVT1 NONHSAG099126 lncRNA PVT1 facilitated M1 polarization macrophage via increasing IL-16 expression by sponging miR-145-5p Luciferase Activity Assay; RIP Homo sapiens 34514000 Literature mining ncRI-51490477 miR-214-3p MI0000290 miRNA LncPVT1 ENSG00000249859 lncRNA LncPVT1 directly interacted with miR-214-3p to impede its role as a sponge of GPX4 Luciferase reporter gene assay and RNA pulldown Homo sapiens 34566408 Literature mining ncRI-51490776 miR-612 MI0003625 miRNA PVT1 NONHSAG099126 lncRNA miR-612 binds to PVT1 and CENP-H. Thus, we speculate that PVT1/miR-612/CENP-H forms a ceRNA network and functions via the interaction with CENP-H and CDK1 dual-luciferase assay; FISH Homo sapiens 33948369 Literature mining ncRI-51490798 miR-497-5p MI0003138 miRNA PVT1 NONHSAG099126 lncRNA cytoplasmic-localized lncRNA-PVT1 could competitively bind miR-497-5p. MiR-497-5p was further observed to attenuate silica-induced pulmonary fibrosis by targeting Smad3 and Bcl2. Luciferase reporter gene assay and RNA pull-down experiment Homo sapiens 33601175 Literature mining ncRI-51491517 PVT1 NONHSAG099126 lncRNA RAB7 P51149 protein PVT1 affects the expression and localization of RAB7 in HS766T cells RNA pull-down assay; RIP Homo sapiens 32499447 Literature mining ncRI-51491823 PVT1 NONHSAG099126 lncRNA miR-148 MI0000253 miRNA miR-148 directly targets PVT1 Dual-Luciferase Reporter Assay Homo sapiens 32184617 Literature mining ncRI-51492025 miR-27b-3p MI0000440 miRNA PVT1 NONHSAG099126 lncRNA TRAF3 expression was positively regulated by PVT1 via sponging miR-27b-3p luciferase reporter, RNA immunoprecipitation and RNA pull-down assays Homo sapiens 31863917 Literature mining ncRI-51492034 miR-140 MI0000456 miRNA PVT1 NONHSAG099126 lncRNA PVT1 directly bound to miR-140 and acted as a microRNA sponge luciferase reporter assay and microRNA pull-down assay Homo sapiens 31222482 Literature mining ncRI-51492321 PVT1 NONHSAG099126 lncRNA miR-183-5p MI0000273 miRNA The luciferase reporter assay showed that the co-transfection with miR-183-5p mimic and pGL3-PVT1-wt vector significantly lowered the luciferase activity, while the co-transfection with miR-183-5p mimic and pGL3-PVT1-mut vector did not affect the luciferase activity Luciferase screening, an RNA-binding protein immunoprecipitation (RIP) assay, quantitative real-time PCR, and western blotting assays Homo sapiens 31699956 Literature mining ncRI-51492326 PVT1 NONHSAG099126 lncRNA miR-17-3p MI0000071 miRNA Then, dual luciferase reporter gene assay, RNA binding protein immunoprecipitation, and RNA pull-down assays showed that lncRNA PVT1 specifically bound to miR-17-3p, and that MDM2 was a target gene of miR-17-3p.  dual luciferase reporter gene assay, RNA binding protein immunoprecipitation, and RNA pull-down assay Homo sapiens 31770435 Literature mining ncRI-51492717 PVT1 NONHSAG099126 lncRNA miR-16-5p MI0000070 miRNA Dual-luciferase reporter and RNA pull-down assays indicated that PVT1 binds to miR-16-5p. dual-luciferase reporter assay;RNA pull-down assay Homo sapiens 32276209 Literature mining ncRI-51492764 PVT1 NONHSAG099126 lncRNA miR-214 MI0000290 miRNA PVT1 regulated ferroptosis through miR-214-mediated TFR1 and TP53 expression. dual-luciferase reporter assay Homo sapiens 32827544 Literature mining ncRI-51492934 PVT1 NONHSAG099126 lncRNA miR-27b-3p MI0000440 miRNA microRNA (miR)-27b-3p could competitively bind with PVT1. dual-luciferase reporter assay Homo sapiens 33106979 Literature mining ncRI-51493011 PVT1 NONHSAG099126 lncRNA FOXO3A O43524 protein PVT1 could bind with Foxo3a. dual-luciferase reporter assay;RNA immunoprecipitation;RNA pull-down assay Homo sapiens 33393111 Literature mining ncRI-51493038 PVT1 NONHSAG099126 lncRNA miR-30a MI0000088 miRNA PVT1 could bind with miR-30a and increase the expression of Snail by acting as a competing endogenous RNA, whereas re-expression of miR-30a in GC cells rescued the EMT markers, decreased Snail level, and inhibited GC cell migration dual-luciferase reporter assay Homo sapiens 32557622 Literature mining ncRI-51493244 PVT1 NONHSAG099126 lncRNA miR-23b-3p MI0000439 miRNA EGR1 was confirmed as downstream target of miR-23b-3p and miR-23b-3p could specially bind to PVT1 dual-luciferase reporter assay Homo sapiens 33408314 Literature mining ncRI-51493267 PVT1 NONHSAG099126 lncRNA STAT3 P40763 protein PVT1 interacted with and activated STAT3 through a 850-1770nt fragment. dual-luciferase reporter assay;RNA pull-down assay;chromatin immunoprecipitation Homo sapiens 32729021 Literature mining ncRI-51493343 PVT1 NONHSAG099126 lncRNA miR-543 MI0005565 miRNA PVT1 knockdown has the potency to hinder RA progression by inhibiting SCUBE2 expression to sponge miR-543. dual-luciferase reporter assay;RNA immunoprecipitation Homo sapiens 32293498 Literature mining ncRI-51493459 PVT1 NONHSAG099126 lncRNA miR-152-3p MI0000462 miRNA Luciferase and ChIP assay results confirmed that E2F3 modulates the transcriptional activation of MAPK8. Long noncoding RNA PVT1 activated E2F3 signaling by sponging miR-152-3p. The PVT1/miR-152-3p/E2F3/MAPK8 axis promoted CRC progression. Luciferase; ChIP assay Homo sapiens 34418232 Literature mining ncRI-51493540 PVT1 NONHSAG099126 lncRNA miR-17-5p MI0000071 miRNA PVT1 knockdown promoted cell viability, suppressed inflammatory response and apoptosis by regulating miR-17-5p expression and NF-κB pathway in LPS-stimulated HK-2 cells. dual-luciferase reporter; RIP; RNA pull-down assays Homo sapiens 34089461 Literature mining ncRI-51493659 PVT1 NONHSAG099126 lncRNA miR-214  MI0000290 miRNA Kaempferol ameliorated the regulatory effects of PVT1/miR-214 on high glucose-induced EMT through PAK4/β-catenin in SRA01/04 cells. Luciferase reporter assays Homo sapiens 33527844 Literature mining ncRI-51493691 PVT1 NONHSAG099126 lncRNA miR-29 MI0000087 miRNA VT1 facilitated the progression of AML via regulating miR-29 family/WAVE1 axis, which supported the conclusion that PVT1 may be a promising therapeutic target for AML.  dual luciferase reporter assay; RNA immunoprecipitation assay Homo sapiens 33558065 Literature mining ncRI-51493701 PVT1 NONHSAG099126 lncRNA miR-153-3p MI0000463 miRNA Dual-luciferase reporter gene and RNA immunoprecipitation assays were used to confirm the interaction between miR-153-3p and PVT1 or growth factor receptor binding protein 2 (GRB2).  Dual-luciferase reporter gene; RNA immunoprecipitation assays Homo sapiens 34627697 Literature mining ncRI-51493751 PVT1 NONHSAG099126 lncRNA miR-143 MI0000459 miRNA PVT1 knockdown inhibited autophagy and improved gemcitabine sensitivity via the miR-143/HIF-1α/VMP1 axis in pancreatic cancer. dual-luciferase reporter assays Homo sapiens 33565800 Literature mining ncRI-51493858 PVT1 NONHSAG099126 lncRNA miR-3619-5p MI0016009 miRNA Overexpression of PVT1 was positively correlated with MKL1 upregulation, which promoted HepG2 cell migration. miR-3619-5p inhibited MKL1 expression in HCC cells by acting on its 3'-UTR. Luciferase assays; RNA-FISH; RNA immunoprecipitation; chromatin immunoprecipitation assays Homo sapiens 32156248 Literature mining ncRI-51493984 PVT1 NONHSAG099126 lncRNA miR-590-5p MI0003602 miRNA The lncRNA PVT1/miR-590-5p/FSTL1 axis modulates ASMCs proliferation and migration following PDGF-BB stimulation, providing a potential therapeutic target to attenuate airway remodelling in asthma. Dual-luciferase reporter assay Homo sapiens 33825599 Literature mining ncRI-51493992 PVT1 NONHSAG099126 lncRNA miR-146a MI0000477 miRNA Overexpression of PVT1 enhanced TNF receptor-associated factor (TRAF) 6 expression by directly targeting miR-146a. Bioinformatic analysis; methylation profiling; Luciferase reporter system Homo sapiens 34214903 Literature mining ncRI-51494030 PVT1 NONHSAG099126 lncRNA miR-328-3p MI0000804 miRNA PVT1 promotes ccRCC cells proliferation by sponging miR-328-3p to upregulate FAM193B and activate the MAPK/ERK and PI3K/AKT pathways. dual-luciferase reporter assays; argonaute 2-RNA immunoprecipitation (AGO2-RIP); quantitative PCR arrays; western blot assay; rescue experiments Homo sapiens 34518442 Literature mining ncRI-51494121 PVT1 NONHSAG099126 lncRNA HIF2α Q99814 protein Mechanistically, PVT1 interacted with HIF2α protein and enhanced its stability by protecting it from ubiquitination-dependent degradation, thereby exerting its biological significance. Western blot; RNA pull-down; RNA immunoprecipitation (RIP) assays Homo sapiens 34321604 Literature mining ncRI-51494680 PVT1 NONHSAG099126 lncRNA miR-365 MI0000767 miRNA PVT1 regulated the stemness and sensitivity of TMZ of glioma cells through miR-365/ELF4/ SOX2 axis. dual-luciferase assay Homo sapiens 34230224 Literature mining ncRI-51494817 PVT1 NONHSAG099126 lncRNA EZH2 A0A090N8E9 protein LncRNA PVT1 promotes NSCLC metastasis through EZH2-mediated activation of Hippo/NOTCH1 signaling pathways.  RNA pull-down assay Homo sapiens 33650817 Literature mining ncRI-51494974 PVT1 NONHSAG099126 lncRNA TRIM24 O15164 protein Mechanistic investigations found that PVT1 interacted with TRIM24 directly and increased its protein stability. RNA pull-down;RIP Homo sapiens 34938610 Literature mining ncRI-51495124 PVT1 NONHSAG099126 lncRNA miR-26a MI0000750 miRNA Altogether, PVT1 targetes miR-26a to promote KLF4 expression and activate PI3K/AKT signaling pathway. luciferase reporter assay Homo sapiens 34141179 Literature mining ncRI-51495193 PVT1 NONHSAG099126 lncRNA miR-3127-5p MI0014144 miRNA Luciferase reporter assays addressed the possible interaction between miR-3127-5p and PVT1 or NCKAP1L, which was predicted by starBase analysis. Luciferase reporter assays Homo sapiens 34898354 Literature mining ncRI-51495219 PVT1 NONHSAG099126 lncRNA miR-128-3p MI0000447 miRNA Mechanistically, PVT1 upregulates FOXQ1 via miR-128-3p and promotes epithelial-mesenchymal transition. Dual-luciferase reporter assay and RNA pull-down Homo sapiens 34922601 Literature mining ncRI-51495220 PVT1 NONHSAG099126 lncRNA UPF1 Q92900 protein In addition, PVT1 binds to the UPF1 protein, thereby inducing epithelial-mesenchymal transition, proliferation and metastasis in breast cancer cells. RNA pull-down Homo sapiens 34922601 Literature mining ncRI-51495280 PVT1 NONHSAG099126 lncRNA HIF-1α ENSG00000100644 protein In addition, we found that PVT1 could bind to HIF-1α and increases HIF-1α post-translationally. Biotin pull-down assay Homo sapiens 34245303 Literature mining ncRI-51495350 PVT1 NONHSAG099126 lncRNA miR-30 c-5p MI0000736 miRNA Moreover, the correlation between lncRNA PVT1 and miR-30 c-5p was predicted and verified using StarBase3.0, TargetScan, and luciferase reporter-gene assays.  luciferase reporter-gene assays Homo sapiens 35038974 Literature mining ncRI-51495392 PVT1 NONHSAG099126 lncRNA miR-34b-5p MI0000742 miRNA ChIP and Dual-luciferase assay were utilized to validate interactions of Foxp1/promoters, PVT1/miR-34b-5p and miR-34b-5p/Foxp1.  Dual-luciferase assay Homo sapiens 35098439 Literature mining