InterID NcRNAName NcRNAID NcRNAType PartnerName PartnerID PartnerType Description Experiment Organism PubMedID TissueOrCellLine DataSource ncRI-40044411 RP11-314C16.1 NONHSAG042968 lncRNA ADAR P55265 protein Genomic analysis of ADAR1 binding CLIP-Seq Homo sapiens 25751603 U87MG High-throughput data ncRI-40044412 RP11-314C16.1 NONHSAG042968 lncRNA WDR33 Q9C0J8 protein PAR-CLIP showed that WDR33 binds in and very close to the AAUAAA signal PAR-CLIP Homo sapiens 25301781 HEK293 High-throughput data ncRI-40052141 RP11-314C16.1 NONHSAG042968 lncRNA FUS P35637 protein PAR-CLIP defined global RNA targets for all human FET proteins and two ALS-causing human FUS mutants. CLIP-Seq;PAR-CLIP Homo sapiens 22081015; 23023293 HEK293; human brain High-throughput data ncRI-40091202 RP11-314C16.1 NONHSAG042968 lncRNA hnRNPM P52272 protein Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins;CLIPseq data were analysed by CLIPdb CLIP-Seq Homo sapiens 22574288 HEK293T High-throughput data ncRI-40096308 RP11-314C16.1 NONHSAG042968 lncRNA CPSF7 Q8N684 protein We performed PAR-CLIP experiments for 3' end processing factors;CLIPseq data were analysed by CLIPdb PAR-CLIP Homo sapiens 22813749 HEK293 High-throughput data ncRI-40099911 RP11-314C16.1 NONHSAG042968 lncRNA CPSF6 Q16630 protein We performed PAR-CLIP experiments for 3' end processing factors;CLIPseq data were analysed by CLIPdb PAR-CLIP Homo sapiens 22813749 HEK293 High-throughput data ncRI-40122253 RP11-314C16.1 NONHSAG042968 lncRNA TDP-43 - protein CLIP-Seq of human brain and neuroblastoma sample to characterisethe RNA targets and position-dependent splicing regulation by TDP-43;CLIPseq data were analysed by CLIPdb iCLIP Homo sapiens 21358640 SH-SY5Y High-throughput data ncRI-40135309 RP11-314C16.1 NONHSAG042968 lncRNA RBM6 P78332 protein CLIP-Seq analysis of RBM5, RBM6 and RBM10, with 2 biological replicates and one non-specific control for each protein. CLIP-Seq Homo sapiens 24332178 HeLa High-throughput data ncRI-40144396 RP11-314C16.1 NONHSAG042968 lncRNA RBM10 P98175 protein CLIP-Seq analysis of RBM5, RBM6 and RBM10, with 2 biological replicates and one non-specific control for each protein. CLIP-Seq Homo sapiens 24332178 HeLa High-throughput data ncRI-40162778 RP11-314C16.1 NONHSAG042968 lncRNA UPF1 Q92900 protein PAR-CLIP of UPF1 reveals that MOV10 and UPF1 bind to RNA in close proximity. PAR-CLIP Homo sapiens 24726324 HEK293 High-throughput data ncRI-40187447 RP11-314C16.1 NONHSAG042968 lncRNA hnRNPA2B1 O88569 protein Nuclear HNRNPA2B1 HITS-CLIP. HITS-CLIP Homo sapiens MDA-MB-231 High-throughput data ncRI-41020034 RP11-314C16.1 NONHSAG042968.3 lncRNA MESDC1 ENSG00000140406 mRNA RNA-RNA interaction from RISE database PARIS Homo sapiens 27180905 HeLa RISE database ncRI-50001933 HULC NONHSAG042968 lncRNA TRIM25 Q14258 protein binding derived from CLIP-seq dataset(GSE104949) CLIP-seq Homo sapiens 29117863 HeLa High-throughput data ncRI-50007735 HULC NONHSAG042968 lncRNA DHX36 Q9H2U1 protein binding derived from CLIP-seq dataset(GSE105171); DHX36-iso1 E335A overexpression PAR-CLIP Homo sapiens 31160600 HEK293 High-throughput data ncRI-50013229 HULC NONHSAG042968 lncRNA DHX36 Q9H2U1 protein binding derived from CLIP-seq dataset(GSE105171); DHX36-iso2 overexpression PAR-CLIP Homo sapiens 31160600 HEK293 High-throughput data ncRI-50014465 HULC NONHSAG042968 lncRNA AGO2 Q9UKV8 protein binding derived from CLIP-seq dataset(GSE107468) HITS-CLIP Homo sapiens 30455455 "Primary Motor Cortex (M1), Gestation Week 19.5" High-throughput data ncRI-50021344 HULC NONHSAG042968 lncRNA HNRNPM P52272 protein binding derived from CLIP-seq dataset(GSE113783) eCLIP Homo sapiens LNCaP High-throughput data ncRI-50022944 HULC NONHSAG042968 lncRNA RBMX P38159 protein binding derived from CLIP-seq dataset(GSE114311) PAR-CLIP Homo sapiens 31445886 HEK293T High-throughput data ncRI-50029652 HULC NONHSAG042968 lncRNA SOX2 P48431 protein binding derived from CLIP-seq dataset(GSE115273) PAR-CLIP Homo sapiens 32016422 HEK293T High-throughput data ncRI-50041655 HULC NONHSAG042968 lncRNA EXOSC10 Q01780 protein binding derived from CLIP-seq dataset(GSE120574) iCLIP Homo sapiens 30840897 HEK293T High-throughput data ncRI-50051622 HULC NONHSAG042968 lncRNA AGO1 Q9UL18 protein binding derived from CLIP-seq dataset(GSE136907); cell treat with Hypoxia iCLIP Homo sapiens Human microvascular endothelial cells High-throughput data ncRI-50052823 HULC NONHSAG042968 lncRNA AGO1 Q9UL18 protein binding derived from CLIP-seq dataset(GSE136907); cell treat with Normoxia iCLIP Homo sapiens Human microvascular endothelial cells High-throughput data ncRI-50053591 HULC NONHSAG042968 lncRNA YTHDF2 Q9Y5A9 protein binding derived from CLIP-seq dataset(GSE137258); MYC-ER HMEC eCLIP-seq Homo sapiens HMEC High-throughput data ncRI-50062567 HULC NONHSAG042968 lncRNA IGF2BP1 Q9NZI8 protein binding derived from CLIP-seq dataset(GSE138063) PAR-CLIP Homo sapiens 31768017 K562 CML-derived cell line High-throughput data ncRI-50071936 HULC NONHSAG042968 lncRNA IGF2BP3 O00425 protein binding derived from CLIP-seq dataset(GSE138063) PAR-CLIP Homo sapiens 31768017 K562 CML-derived cell line High-throughput data ncRI-50077033 HULC NONHSAG042968 lncRNA ZC3HAV1 Q7Z2W4 protein binding derived from CLIP-seq dataset(GSE139667) PAR-CLIP Homo sapiens 31719195 HEK293T High-throughput data ncRI-50078954 HULC NONHSAG042968 lncRNA FTO Q9C0B1 protein binding derived from CLIP-seq dataset(GSE146207) CLIP Homo sapiens 32213595 HEK293T High-throughput data ncRI-50082345 HULC NONHSAG042968 lncRNA ZMAT3 Q9HA38 protein binding derived from CLIP-seq dataset(GSE150715); cell treat with DMSO PAR-CLIP Homo sapiens 33334821 HCT116 High-throughput data ncRI-50086008 HULC NONHSAG042968 lncRNA ZMAT3 Q9HA38 protein binding derived from CLIP-seq dataset(GSE150715); cell treat with Nutlin-3a PAR-CLIP Homo sapiens 33334821 HCT116 High-throughput data ncRI-50087890 HULC NONHSAG042968 lncRNA A1CF Q9NQ94 protein binding derived from CLIP-seq dataset(GSE154168) easyCLIP Homo sapiens 33692367 HEK293T High-throughput data ncRI-50089278 HULC NONHSAG042968 lncRNA A1CF Q9NQ94 protein binding derived from CLIP-seq dataset(GSE154168); easyCLIP A1CF-E34K easyCLIP Homo sapiens 33692367 HEK293T High-throughput data ncRI-50090124 HULC NONHSAG042968 lncRNA CRNKL1 Q9BZJ0 protein binding derived from CLIP-seq dataset(GSE154168) easyCLIP Homo sapiens 33692367 HEK293T High-throughput data ncRI-50093386 HULC NONHSAG042968 lncRNA KHDRBS2 Q5VWX1 protein binding derived from CLIP-seq dataset(GSE154168) easyCLIP Homo sapiens 33692367 HEK293T High-throughput data ncRI-50095189 HULC NONHSAG042968 lncRNA KHDRBS2 Q5VWX1 protein binding derived from CLIP-seq dataset(GSE154168); easyCLIP KHDRBS2-R168C easyCLIP Homo sapiens 33692367 HEK293T High-throughput data ncRI-50105197 HULC NONHSAG042968 lncRNA SP1 P08047 protein binding derived from CLIP-seq dataset(GSE165739) iCLIP Homo sapiens HEK293 High-throughput data ncRI-50106848 HULC NONHSAG042968 lncRNA CPSF1 Q10570 protein binding derived from CLIP-seq dataset(GSE165739) iCLIP Homo sapiens HEK293 High-throughput data ncRI-50108541 HULC NONHSAG042968 lncRNA CPSF7 Q8N684 protein binding derived from CLIP-seq dataset(GSE165739) iCLIP Homo sapiens HEK293 High-throughput data ncRI-50110193 HULC NONHSAG042968 lncRNA USF2 Q15853 protein binding derived from CLIP-seq dataset(GSE165739) iCLIP Homo sapiens HEK293 High-throughput data ncRI-51487536 HULC NONHSAG042968 lncRNA FoxM1 Q08050 protein The interaction between lncRNA HULC and FoxM1 was confirmed by RNA pull-down and RIP assay. RNA pull-down; RIP Homo sapiens 31485766 Literature mining ncRI-51487864 miR-9-5p MI0000466 miRNA HULC NONHSAG042968 lncRNA The targeted interaction between HULC and miR-9-5p was verified by dual-luciferase reporter and RNA pull-down assays. dual-luciferase reporter; RNA pull-down assays Homo sapiens 31726371 Literature mining ncRI-51487981 miR-372-3p MI0000780 miRNA HULC NONHSAG042968 lncRNA Dual-luciferase reporter assays suggested that miR-372-3p could directly bind both HULC and Rab11a Dual-luciferase reporter assays Homo sapiens 31558873 Literature mining ncRI-51489974 miR-137 MI0000454 miRNA HULC NONHSAG042968 lncRNA Long noncoding RNA HULC contributes to paclitaxel resistance in ovarian cancer via miR-137/ITGB8 axis dual luciferase reporter and RNA pull-down assays Homo sapiens 34250246 Literature mining ncRI-51491105 HULC NONHSAG042968 lncRNA LDHA P00338 protein Intriguingly, HULC directly binds to two glycolytic enzymes, lactate dehydrogenase A (LDHA) and pyruvate kinase M2 (PKM2). TOBAP-MS; His-tag pull-down assay; RNA pull-down; RIP Homo sapiens 32572027 Literature mining ncRI-51491106 HULC NONHSAG042968 lncRNA PKM2 A0A024R5Z9 protein Intriguingly, HULC directly binds to two glycolytic enzymes, lactate dehydrogenase A (LDHA) and pyruvate kinase M2 (PKM2). TOBAP-MS; His-tag pull-down assay; RNA pull-down; RIP Homo sapiens 32572027 Literature mining ncRI-51491373 HULC NONHSAG042968 lncRNA miR-663b MI0006336 miRNA Long non-coding RNA HULC regulates TLR4 expression by acting as ceRNA to attract miR-663b in skin fibroblasts of pediatric burns dual-luciferase reporter and RIP assay Homo sapiens 34017408 Literature mining ncRI-51491463 HULC NONHSAG042968 lncRNA miR-29b MI0000105 miRNA HULC could directly target miR-29b. Luciferase, pull-down, and RNA IP experiments Homo sapiens 32572926 Literature mining ncRI-51492213 HULC NONHSAG042968 lncRNA miR-6754-5p MI0022599 miRNA we found that HULC regulates the expression of LYPD1 through sponging miR-6754-5p qPCR Homo sapiens 31824174 Literature mining ncRI-51492271 HULC NONHSAG042968 lncRNA miR-101 MI0000739 miRNA The relevancy between miR-101 and HULC was investigated by utilizing bioinformatics prediction, luciferase reporter assay, RNA pull-down and immunoprecipitation.  bioinformatics prediction, luciferase reporter assay, RNA pull-down and immunoprecipitation Homo sapiens 30981080 Literature mining ncRI-51493182 HULC NONHSAG042968 lncRNA miRNA-512 MI0003140 miRNA MiR-512 could directly bind to and negatively regulate the expression of PTGS1 and HULC. The expression of HULC was positively correlated with the expression of PTGS1 and PGE1. dual-luciferase reporter assay Homo sapiens 32678165 Literature mining ncRI-51493246 HULC NONHSAG042968 lncRNA miR-204-5p MI0000284 miRNA Mechanically, HULC positively regulated TRPM7 expression by sponging miR-204-5p in HUVECs dual-luciferase reporter assay;RNA immunoprecipitation Homo sapiens 32484206 Literature mining ncRI-51493974 HULC NONHSAG042968 lncRNA miR-150-5p MI0000479 miRNA HULC was a sponge of miR-150-5p. HULC contributed to imatinib resistance through regulation of miR-150-5p. MCL1 bound to miR-150-5p and reversed the effect of HULC on imatinib resistance. dual-luciferase reporter assay Homo sapiens 33587348 Literature mining ncRI-51494083 HULC NONHSAG042968 lncRNA miR-383-5p MI0000791 miRNA miR-383-5p was a direct target of HULC and miR-383-5p reversed the effects of HULC on the progression of HCC cells and chemosensitivity of Oxa. dual-luciferase reporter assay; RNA immunoprecipitation assay Homo sapiens 34223709 Literature mining