InterID NcRNAName NcRNAID NcRNAType PartnerName PartnerID PartnerType Description Experiment Organism PubMedID TissueOrCellLine DataSource ncRI-40014085 C1orf109 NONHSAG001074 lncRNA WDR33 Q9C0J8 protein PAR-CLIP showed that WDR33 binds in and very close to the AAUAAA signal PAR-CLIP Homo sapiens 25301781 HEK293 High-throughput data ncRI-40085887 C1orf109 NONHSAG001074 lncRNA HNRNPA1 P09651 protein Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins;CLIPseq data were analysed by CLIPdb CLIP-Seq Homo sapiens 22574288 HEK293T High-throughput data ncRI-40091943 C1orf109 NONHSAG001074 lncRNA CPSF7 Q8N684 protein We performed PAR-CLIP experiments for 3' end processing factors;CLIPseq data were analysed by CLIPdb PAR-CLIP Homo sapiens 22813749 HEK293 High-throughput data ncRI-40097431 C1orf109 NONHSAG001074 lncRNA CPSF6 Q16630 protein We performed PAR-CLIP experiments for 3' end processing factors;CLIPseq data were analysed by CLIPdb PAR-CLIP Homo sapiens 22813749 HEK293 High-throughput data ncRI-40109557 C1orf109 NONHSAG001074 lncRNA ZC3H7B Q9UGR2 protein The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts;CLIPseq data were analysed by CLIPdb PAR-CLIP Homo sapiens 22681889 HEK293 High-throughput data ncRI-40122543 C1orf109 NONHSAG001074 lncRNA TARBP2 Q15633 protein Identify TARBP2 binding sites on endogenous RNA. HITS-CLIP Homo sapiens 25043050 MDA-LM2 High-throughput data ncRI-40146435 C1orf109 NONHSAG001074 lncRNA MOV10 P22626 protein we demonstrate that MOV10 has an ATP-dependent 5 to 3 in vitro RNA unwinding activity and determine the RNA-binding sites of MOV10 and its helicase mutants using PAR-CLIP. PAR-CLIP Homo sapiens 24726324 HEK293 High-throughput data ncRI-40155584 C1orf109 NONHSAG001074 lncRNA UPF1 Q92900 protein PAR-CLIP of UPF1 reveals that MOV10 and UPF1 bind to RNA in close proximity. PAR-CLIP Homo sapiens 24726324 HEK293 High-throughput data ncRI-40164502 C1orf109 NONHSAG001074 lncRNA ZFP36 M0QY76 protein Global Target mRNA Specification and Regulation by RNA-Binding Protein ZFP36/Tristetraprolin/TTP. PAR-CLIP Homo sapiens 24401661 HEK293 High-throughput data ncRI-40166192 C1orf109 NONHSAG001074 lncRNA hnRNPA2B1 O88569 protein Nuclear HNRNPA2B1 HITS-CLIP. HITS-CLIP Homo sapiens MDA-MB-231 High-throughput data ncRI-40193635 C1orf109 NONHSAG001074 lncRNA FUS P35637 protein CLIP of Fus/Tls in adult human brain. CLIP-Seq Homo sapiens 23023293 human brain High-throughput data ncRI-40290266 C1orf109 NONHSAG001074 lncRNA hsa-miR-1251 MI0006386 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40291686 C1orf109 NONHSAG001074 lncRNA hsa-miR-1306-3p MI0006443 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40299545 C1orf109 NONHSAG001074 lncRNA hsa-mir-181a/181b/18 MI0000289 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40299789 C1orf109 NONHSAG001074 lncRNA hsa-mir-181b-3p MI0000270 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40300045 C1orf109 NONHSAG001074 lncRNA hsa-mir-181c MI0000271 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40300281 C1orf109 NONHSAG001074 lncRNA hsa-mir-181d MI0003139 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40301164 C1orf109 NONHSAG001074 lncRNA hsa-mir-186-3p MI0000483 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40305487 C1orf109 NONHSAG001074 lncRNA hsa-miR-200b-5p MI0000342 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40305678 C1orf109 NONHSAG001074 lncRNA hsa-mir-200c-3p MI0000650 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40308631 C1orf109 NONHSAG001074 lncRNA hsa-mir-216a-3p MI0000292 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40309803 C1orf109 NONHSAG001074 lncRNA hsa-mir-223-3p MI0000300 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40320132 C1orf109 NONHSAG001074 lncRNA hsa-mir-331-3p MI0000812 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40324005 C1orf109 NONHSAG001074 lncRNA hsa-miR-369-3p MI0000777 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40325264 C1orf109 NONHSAG001074 lncRNA hsa-mir-374a-3p MI0000782 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40325434 C1orf109 NONHSAG001074 lncRNA hsa-miR-374b-3p MI0005566 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40325591 C1orf109 NONHSAG001074 lncRNA hsa-miR-374c-5p MI0016684 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40325806 C1orf109 NONHSAG001074 lncRNA hsa-miR-376a-3p MI0000784 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40325966 C1orf109 NONHSAG001074 lncRNA hsa-miR-376b-3p MI0002466 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40328731 C1orf109 NONHSAG001074 lncRNA hsa-miR-410-3p MI0002465 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40329453 C1orf109 NONHSAG001074 lncRNA hsa-miR-423-5p MI0001445 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40330299 C1orf109 NONHSAG001074 lncRNA hsa-miR-4262 MI0015872 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40330655 C1orf109 NONHSAG001074 lncRNA hsa-miR-429 MI0001641 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40336274 C1orf109 NONHSAG001074 lncRNA hsa-mir-494-3p MI0003134 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40340795 C1orf109 NONHSAG001074 lncRNA hsa-miR-543 MI0005565 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40341554 C1orf109 NONHSAG001074 lncRNA hsa-miR-582-3p MI0003589 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40342617 C1orf109 NONHSAG001074 lncRNA hsa-miR-655-3p MI0003677 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens miRanda with Ago CLIP data ncRI-40343304 C1orf109 NONHSAG001074 lncRNA hsa-miR-670 MI0003933 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40360145 C1orf109 NONHSAG001074 lncRNA hsa-miR-1224-3p MI0003764 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40363356 C1orf109 NONHSAG001074 lncRNA hsa-miR-135a2 MI0000453 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40363512 C1orf109 NONHSAG001074 lncRNA hsa-miR-135b-5p MI0000810 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40364513 C1orf109 NONHSAG001074 lncRNA hsa-miR-141-3p MI0000457 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40371008 C1orf109 NONHSAG001074 lncRNA hsa-mir-193a-3p/193b MI0000487 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40372884 C1orf109 NONHSAG001074 lncRNA hsa-miR-200a-5p MI0000737 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40375051 C1orf109 NONHSAG001074 lncRNA hsa-miR-212-5p MI0000288 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40376654 C1orf109 NONHSAG001074 lncRNA hsa-miR-219-5p MI0000296 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40378905 C1orf109 NONHSAG001074 lncRNA hsa-miR-296-3p MI0000747 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40382696 C1orf109 NONHSAG001074 lncRNA hsa-miR-3184-3p MI0014226 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40382880 C1orf109 NONHSAG001074 lncRNA hsa-mir-320a MI0000542 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40383047 C1orf109 NONHSAG001074 lncRNA hsa-miR-320b MI0003776 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40383215 C1orf109 NONHSAG001074 lncRNA hsa-miR-320c MI0003778 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40383388 C1orf109 NONHSAG001074 lncRNA hsa-miR-320d MI0008190 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40384519 C1orf109 NONHSAG001074 lncRNA hsa-miR-330-3p MI0000803 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40390189 C1orf109 NONHSAG001074 lncRNA hsa-miR-375 MI0000783 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40395965 C1orf109 NONHSAG001074 lncRNA hsa-miR-4429 MI0016768 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40398072 C1orf109 NONHSAG001074 lncRNA hsa-miR-4782-5p MI0017427 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data ncRI-40406695 C1orf109 NONHSAG001074 lncRNA hsa-mir-6766 MI0022611 miRNA interactions between ncRNAs and miRNAs Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset Homo sapiens TargetScan with Ago CLIP data