Interaction Profile
Interaction ID
ncRI-50015660
Interaction Molecules
SNHG3 -- SMN1
Interaction Level
RNA-Protein
Interaction Class
binding
Data Source
High-throughput data
Tags
Organism
Homo sapiens
Tissue or Cell Type
SH-SY5Y
Experiment
HITS-CLIP
Description
binding derived from CLIP-seq dataset(GSE110411)
Molecule Profile
Reference Information
| Pubmed ID | 30165668 | Journal | Nucleic acids research |
|---|---|---|---|
| Title | High-affinity RNA targets of the Survival Motor Neuron protein reveal diverse preferences for sequence and structural motifs. | ||
| Author | Eric W Ottesen, Natalia N Singh, Diou Luo, Ravindra N Singh | ||
Binding Sites
| Binding Site ID | Location | Conservation Score |
|---|---|---|
| 9990190 | chr8:96281850-96281900 | 0.364720 |
Network View
Disease Annotation
| Molecule | Disease | Data Source |
|---|---|---|
| SNHG3 | Alzheimer's disease | LncRNADisease Database |
| SNHG3 | Alzheimer's disease | MNDR Database |
| SNHG3 | breast cancer | MNDR Database |
| SNHG3 | cancer | MNDR Database |
| SNHG3 | Carcinoma, Non-Small-Cell Lung | MNDR Database |
| SNHG3 | colorectal cancer | MNDR Database |
| SNHG3 | hepatocellular carcinoma | LncRNADisease Database |
| SNHG3 | hepatocellular carcinoma | MNDR Database |
| SNHG3 | Huntington's disease | MNDR Database |
| SNHG3 | lymphoma | MNDR Database |
| SNHG3 | malignant glioma | MNDR Database |
| SNHG3 | melanoma | MNDR Database |
| SNHG3 | neuroblastoma | MNDR Database |
| SNHG3 | Ovarian Neoplasms | MNDR Database |
| SNHG3 | Prostatic Neoplasms | MNDR Database |
| SNHG3 | schizophrenia | MNDR Database |
| SNHG3 | stomach cancer | MNDR Database |
| SNHG3 | thyroid cancer | MNDR Database |
| SNHG3 | Urinary Bladder Neoplasms | MNDR Database |
| SNHG3 | Uterine Cervical Neoplasms | MNDR Database |