Interaction: ncRI-40832526

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Interaction Profile

Interaction ID

ncRI-40832526

Interaction Molecules

hsa-miR-548a-3p -- MBD5

Interaction Level

RNA-RNA

Interaction Class

binding

Data Source

miRanda with Ago CLIP data

Tags

Organism

Homo sapiens

Tissue or Cell Type

motor cortex

Experiment

AGO CLIP

Description

Conserved miRNAs target sites predicted by miRanda overlap with the AGO CLIP dataset

Molecule Profile

hsa-miR-548a-3p

⇔

MBD5

Alias

-

Class

miRNA

miRBase id

MI0003593

Description

Homo sapiens miR-548a-1 stem-loop

Alias

-

Class

mRNA

Ensembl id

ENSG00000204406

Description

Binds to heterochromatin. Does not interact with either methylated or unmethylated DNA (in vitro).

Reference Information
Pubmed ID 24389009 Journal Neuron
Title Transcriptome-wide discovery of microRNA binding sites in human brain.
Author Boudreau RL, Jiang P, Gilmore BL, Spengler RM, Tirabassi R, Nelson JA, Ross CA, Xing Y, Davidson BL
Network View
Disease Annotation
Molecule Disease Data Source
hsa-miR-548a-3p arthritis MNDR Database
hsa-miR-548a-3p autosomal recessive disease MNDR Database
hsa-miR-548a-3p bone disease MNDR Database
hsa-miR-548a-3p brain disease MNDR Database
hsa-miR-548a-3p breast cancer MNDR Database
hsa-miR-548a-3p Breast Neoplasms MNDR Database
hsa-miR-548a-3p cancer MNDR Database
hsa-miR-548a-3p carcinoma MNDR Database
hsa-miR-548a-3p colon cancer MNDR Database
hsa-miR-548a-3p colorectal cancer MNDR Database
hsa-miR-548a-3p diabetes mellitus MNDR Database
hsa-miR-548a-3p embryonal cancer MNDR Database
hsa-miR-548a-3p esophageal cancer MNDR Database
hsa-miR-548a-3p eye disease MNDR Database
hsa-miR-548a-3p familiar ovarian carcinoma MNDR Database
hsa-miR-548a-3p Glioblastoma MNDR Database
hsa-miR-548a-3p heart disease MNDR Database
hsa-miR-548a-3p hepatocellular carcinoma MNDR Database
hsa-miR-548a-3p Her2-receptor positive breast cancer MNDR Database
hsa-miR-548a-3p hypersensitivity reaction type II disease MNDR Database
hsa-miR-548a-3p hypertension MNDR Database
hsa-miR-548a-3p intellectual disability MNDR Database
hsa-miR-548a-3p leukemia MNDR Database
hsa-miR-548a-3p lung adenocarcinoma MNDR Database
hsa-miR-548a-3p lung cancer MNDR Database
hsa-miR-548a-3p lung disease MNDR Database
hsa-miR-548a-3p lymphoma MNDR Database
hsa-miR-548a-3p malignant glioma MNDR Database
hsa-miR-548a-3p melanoma MNDR Database
hsa-miR-548a-3p multiple myeloma MNDR Database
hsa-miR-548a-3p Myasthenia Gravis, Autoimmune, Experimental MNDR Database
hsa-miR-548a-3p nasopharynx carcinoma MNDR Database
hsa-miR-548a-3p nephroblastoma MNDR Database
hsa-miR-548a-3p neurodegenerative disease MNDR Database
hsa-miR-548a-3p osteosarcoma MNDR Database
hsa-miR-548a-3p Ovarian Neoplasms MNDR Database
hsa-miR-548a-3p pancreatic adenocarcinoma MNDR Database
hsa-miR-548a-3p pancreatic cancer MNDR Database
hsa-miR-548a-3p periodontitis MNDR Database
hsa-miR-548a-3p progesterone-receptor negative breast cancer MNDR Database
hsa-miR-548a-3p progesterone-receptor positive breast cancer MNDR Database
hsa-miR-548a-3p Prostatic Neoplasms MNDR Database
hsa-miR-548a-3p relapsing-remitting multiple sclerosis MNDR Database
hsa-miR-548a-3p schizophrenia MNDR Database
hsa-miR-548a-3p skin disease MNDR Database
hsa-miR-548a-3p squamous cell carcinoma MNDR Database
hsa-miR-548a-3p stomach cancer MNDR Database
hsa-miR-548a-3p vascular disease MNDR Database
hsa-miR-548a-3p mental retardation, autosomal dominant eDGAR Database