Interaction Profile
Interaction ID
ncRI-40350450
Interaction Molecules
Malat1 -- mmu-miR-153-3p
Interaction Level
RNA-RNA
Interaction Class
binding;regulatory
Data Source
TargetScan with Ago CLIP data
Tags
Organism
Mus musculus
Tissue or Cell Type
-
Experiment
Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset
Description
interactions between ncRNAs and miRNAs
Molecule Profile
Alias
mmu-miR-153;mmu-miR-153-5p
Class
miRNA
miRBase id
Description
Mus musculus miR-153 stem-loop
Binding Sites
| Binding Site ID | Location | Conservation Score |
|---|---|---|
| 8420369 | chr19:5797440-5797480 | 0.7695 |
| 8420425 | chr19:5797460-5797480 | 0.5685 |
| 8421797 | chr19:5798100-5798120 | 0.86605 |
| 8421839 | chr19:5798140-5798160 | 0.98215 |
| 8421888 | chr19:5798140-5798180 | 0.99035 |
| 8421938 | chr19:5798180-5798200 | 0.813 |
| 8421985 | chr19:5798180-5798300 | 0.921808333333 |
| 8422075 | chr19:5798220-5798240 | 0.747 |
| 8422117 | chr19:5798240-5798260 | 0.9899 |
| 8422659 | chr19:5798620-5798660 | 0.10795 |
| 8422933 | chr19:5798980-5799000 | 0.73305 |
| 8423029 | chr19:5799040-5799140 | 0.57118 |
| 8423151 | chr19:5799180-5799200 | 0.68105 |
| 8423193 | chr19:5799180-5799220 | 0.635875 |
| 8424056 | chr19:5799680-5799840 | 0.33061875 |
| 8424353 | chr19:5799720-5799860 | 0.127842857143 |
| 8424540 | chr19:5799800-5799820 | 0.02095 |
| 8424656 | chr19:5799980-5800040 | 0.344366666667 |
| 8424870 | chr19:5800160-5800180 | 0.8929 |
| 8424923 | chr19:5800160-5800200 | 0.83555 |
| 8425230 | chr19:5800340-5800360 | 0.0161 |
| 8425907 | chr19:5800740-5800760 | 0.08415 |
| 8427453 | chr19:5801560-5801640 | 0.1128875 |
| 8427514 | chr19:5801600-5801620 | 0.033 |
| 8427851 | chr19:5801880-5801900 | 0.0509 |
| 8427880 | chr19:5801900-5801920 | 0.0616 |
| 8427911 | chr19:5802100-5802140 | 0.069675 |
| 8427928 | chr19:5802100-5802160 | 0.0503 |
| 8427954 | chr19:5802120-5802140 | 0.0004 |
| 8428178 | chr19:5802420-5802460 | 0.00325 |
Network View
Disease Annotation
| Molecule | Disease | Data Source |
|---|---|---|
| Malat1 | Alzheimer's disease | MNDR Database |
| Malat1 | amyotrophic lateral sclerosis | MNDR Database |
| Malat1 | Epilepsia Partialis Continua | MNDR Database |
| Malat1 | Huntington's disease | MNDR Database |
| Malat1 | idiopathic pulmonary fibrosis | MNDR Database |
| Malat1 | medulloblastoma | MNDR Database |
| Malat1 | middle cerebral artery infarction | MNDR Database |
| Malat1 | Parkinson's disease | MNDR Database |
| Malat1 | Rett syndrome | MNDR Database |
| Malat1 | West Nile fever | MNDR Database |
| Malat1 | acquired immunodeficiency syndrome | MNDR Database |
| Malat1 | Alzheimer's disease | MNDR Database |
| Malat1 | amyotrophic lateral sclerosis | MNDR Database |
| Malat1 | B-cell lymphoma | MNDR Database |
| Malat1 | bladder urothelial carcinoma | MNDR Database |
| Malat1 | breast cancer | MNDR Database |
| Malat1 | cancer | MNDR Database |
| Malat1 | Carcinoma, Endometrioid | MNDR Database |
| Malat1 | Carcinoma, Non-Small-Cell Lung | MNDR Database |
| Malat1 | colon cancer | MNDR Database |
| Malat1 | colorectal cancer | MNDR Database |
| Malat1 | Congenital Microtia | MNDR Database |
| Malat1 | decreased myogenesis | MNDR Database |
| Malat1 | diabetes mellitus | LncRNADisease Database |
| Malat1 | diabetes mellitus | MNDR Database |
| Malat1 | Diabetic Cardiomyopathies | MNDR Database |
| Malat1 | endometrial stromal sarcoma | MNDR Database |
| Malat1 | esophageal cancer | MNDR Database |
| Malat1 | fatty liver disease | MNDR Database |
| Malat1 | Fibroma | MNDR Database |
| Malat1 | fibrosarcoma | MNDR Database |
| Malat1 | gallbladder cancer | MNDR Database |
| Malat1 | Glioblastoma | MNDR Database |
| Malat1 | hepatocellular carcinoma | MNDR Database |
| Malat1 | histiocytoid hemangioma | MNDR Database |
| Malat1 | HIV | MNDR Database |
| Malat1 | Huntington's disease | MNDR Database |
| Malat1 | Hyperglycemia | MNDR Database |
| Malat1 | kidney cancer | MNDR Database |
| Malat1 | laryngeal squamous cell carcinoma | MNDR Database |
| Malat1 | liver cirrhosis | MNDR Database |
| Malat1 | Liver Neoplasms | MNDR Database |
| Malat1 | lung adenocarcinoma | MNDR Database |
| Malat1 | lung cancer | MNDR Database |
| Malat1 | lung small cell carcinoma | MNDR Database |
| Malat1 | lymphoma | MNDR Database |
| Malat1 | malignant glioma | MNDR Database |
| Malat1 | melanoma | MNDR Database |
| Malat1 | multiple myeloma | MNDR Database |
| Malat1 | nasopharynx carcinoma | MNDR Database |
| Malat1 | neuroblastoma | MNDR Database |
| Malat1 | non-small cell lung carcinoma | MNDR Database |
| Malat1 | oral squamous cell carcinoma | MNDR Database |
| Malat1 | osteosarcoma | MNDR Database |
| Malat1 | ovarian endometrial cancer | MNDR Database |
| Malat1 | Ovarian Neoplasms | MNDR Database |
| Malat1 | pancreatic cancer | MNDR Database |
| Malat1 | pancreatic carcinoma | MNDR Database |
| Malat1 | pancreatic ductal adenocarcinoma | MNDR Database |
| Malat1 | papillary thyroid carcinoma | MNDR Database |
| Malat1 | Parkinson's disease | MNDR Database |
| Malat1 | pituitary adenoma | MNDR Database |
| Malat1 | pre-eclampsia | MNDR Database |
| Malat1 | primary pulmonary hypertension | MNDR Database |
| Malat1 | proliferative vitreoretinopathy | MNDR Database |
| Malat1 | prostat | MNDR Database |
| Malat1 | Prostatic Neoplasms | MNDR Database |
| Malat1 | renal cell carcinoma | MNDR Database |
| Malat1 | renal clear cell carcinoma | MNDR Database |
| Malat1 | retinal degeneration | MNDR Database |
| Malat1 | Seizures | MNDR Database |
| Malat1 | squamous cell carcinoma | MNDR Database |
| Malat1 | stomach cancer | MNDR Database |
| Malat1 | TDP-43 protein, human | MNDR Database |
| Malat1 | thyroid cancer | MNDR Database |
| Malat1 | tongue squamous cell carcinoma | MNDR Database |
| Malat1 | triple-receptor negative breast cancer | MNDR Database |
| Malat1 | urinary bladder cancer | MNDR Database |
| Malat1 | Urinary Bladder Neoplasms | MNDR Database |
| Malat1 | uterine cancer | MNDR Database |
| Malat1 | uterine corpus endometrial stromal sarcoma | MNDR Database |
| Malat1 | Uterine Cervical Neoplasms | MNDR Database |
| Malat1 | uveal melanoma | MNDR Database |
| Malat1 | vulva squamous cell carcinoma | MNDR Database |