Interaction Profile
Interaction ID
ncRI-40006734
Interaction Molecules
XIST -- hsa-miR-497-3p
Interaction Level
RNA-RNA
Interaction Class
regulatory
Data Source
Literature mining;TargetScan with Ago CLIP data
Tags
Organism
Homo sapiens
Tissue or Cell Type
-
Experiment
Conserved miRNAs target sites predicted by TargetScan and miRanda overlap with the AGO CLIP dataset;CLIP
Description
collections from lncRNome
Molecule Profile
Alias
RPI001_1001398;RPI001_1001388;RPI001_488955
Class
lncRNA
NONCODE id
Description
Linc
Alias
hsa-miR-497;hsa-miR-497-5p;miR-497
Class
miRNA
miRBase id
Description
Homo sapiens miR-497 stem-loop
Reference Information
| Pubmed ID | 23846593 | Journal | Database : the journal of biological databases and curation |
|---|---|---|---|
| Title | lncRNome: a comprehensive knowledgebase of human long noncoding RNAs. | ||
| Author | Bhartiya D, Pal K, Ghosh S, Kapoor S, Jalali S, Panwar B, Jain S, Sati S, Sengupta S, Sachidanandan C, Raghava GP, Sivasubbu S, Scaria V | ||
Binding Sites
| Binding Site ID | Location | Conservation Score |
|---|---|---|
| 8388223 | chrX:73041240-73041260 | 0.0013 |
| 8388942 | chrX:73042280-73042320 | 0.0062 |
| 8388961 | chrX:73042320-73042340 | 0.04195 |
| 8389283 | chrX:73042900-73042940 | 0.0058 |
| 8389317 | chrX:73042920-73042940 | 0.00455 |
| 8389896 | chrX:73043960-73043980 | 0.00135 |
| 8389998 | chrX:73044440-73044460 | 0.00385 |
| 8390137 | chrX:73044520-73044580 | 0.0022 |
| 8390161 | chrX:73044560-73044580 | 0.00035 |
| 8391122 | chrX:73046020-73046060 | 0.6663 |
| 8391240 | chrX:73046020-73046080 | 0.6142 |
| 8391397 | chrX:73046020-73046120 | 0.38359 |
| 8391485 | chrX:73046040-73046080 | 0.595975 |
| 8391556 | chrX:73046060-73046080 | 0.51 |
| 8391665 | chrX:73046060-73046120 | 0.195116666667 |
| 8393532 | chrX:73046820-73046840 | 0.00295 |
| 8393588 | chrX:73046820-73046860 | 0.001575 |
| 8393679 | chrX:73046920-73046940 | 0.0031 |
| 8394462 | chrX:73047220-73047300 | 0.053475 |
| 8394552 | chrX:73047280-73047300 | 0.1402 |
| 8394617 | chrX:73047280-73047320 | 0.2021 |
| 8394667 | chrX:73047300-73047320 | 0.264 |
| 8394756 | chrX:73047300-73047360 | 0.117233333333 |
| 8395537 | chrX:73047660-73047680 | 0.1362 |
| 8395716 | chrX:73048900-73048920 | 0.3647 |
| 8396589 | chrX:73053160-73053180 | 5e-05 |
| 8397159 | chrX:73061840-73061880 | 0.241275 |
| 8397181 | chrX:73061860-73061880 | 0.47815 |
| 8397873 | chrX:73062540-73062680 | 0.0397285714286 |
| 8397961 | chrX:73062580-73062660 | 0.062125 |
| 8398017 | chrX:73062580-73062680 | 0.04975 |
| 8398059 | chrX:73062620-73062640 | 0.018 |
| 8398094 | chrX:73062620-73062660 | 0.009125 |
| 8398138 | chrX:73062620-73062680 | 0.00616666666667 |
| 8398165 | chrX:73062640-73062660 | 0.00025 |
| 8398213 | chrX:73062640-73062700 | 0.00065 |
| 8398539 | chrX:73062980-73063060 | 0.00435 |
| 8398595 | chrX:73062980-73063080 | 0.00348 |
| 8398616 | chrX:73063000-73063020 | 0.004 |
| 8398650 | chrX:73063000-73063040 | 0.003225 |
| 8398693 | chrX:73063000-73063060 | 0.00216666666667 |
| 8398722 | chrX:73063020-73063040 | 0.00245 |
| 8398759 | chrX:73063020-73063060 | 0.00125 |
| 8400505 | chrX:73064620-73064640 | 0.0003 |
| 8400541 | chrX:73064640-73064660 | 0.00115 |
| 8401358 | chrX:73065600-73065640 | 0.0047 |
| 8401395 | chrX:73065600-73065660 | 0.00323333333333 |
| 8401415 | chrX:73065640-73065660 | 0.0003 |
| 8401470 | chrX:73065640-73065700 | 0.000866666666667 |
| 8401646 | chrX:73065820-73065840 | 0.00035 |
| 8401719 | chrX:73065820-73065920 | 0.00067 |
| 8401788 | chrX:73065840-73065920 | 0.00075 |
| 8401842 | chrX:73065860-73065920 | 0.00055 |
| 8401887 | chrX:73065880-73065920 | 5e-05 |
| 8402642 | chrX:73066420-73066480 | 0.000716666666667 |
| 8402741 | chrX:73066440-73066520 | 0.0007 |
| 8402782 | chrX:73066460-73066480 | 0.00075 |
| 8402817 | chrX:73066480-73066500 | 0.00135 |
| 8402858 | chrX:73066480-73066520 | 0.000975 |
| 8404342 | chrX:73067960-73067980 | 0.0001 |
| 8404433 | chrX:73068060-73068100 | 0.000775 |
| 8404467 | chrX:73068080-73068100 | 0.0003 |
| 8404493 | chrX:73068100-73068120 | 0.0003 |
| 8404522 | chrX:73068140-73068160 | 0.01225 |
| 8404653 | chrX:73068340-73068380 | 0.001 |
| 8404721 | chrX:73068340-73068460 | 0.00253333333333 |
| 8404744 | chrX:73068360-73068380 | 0.0003 |
| 8404778 | chrX:73068380-73068400 | 0.001 |
| 8405361 | chrX:73068740-73068760 | 0.00065 |
Network View
Disease Annotation
| Molecule | Disease | Data Source |
|---|---|---|
| XIST | adrenocortical carcinoma | MNDR Database |
| XIST | Adrenocortical Carcinoma | MNDR Database |
| XIST | AIDS Dementia Complex | MNDR Database |
| XIST | Alzheimer's disease | MNDR Database |
| XIST | arthritis | MNDR Database |
| XIST | astrocytoma | MNDR Database |
| XIST | atherosclerosis | MNDR Database |
| XIST | autosomal recessive disease | MNDR Database |
| XIST | autosomal recessive limb-girdle muscular dystrophy type 2A | MNDR Database |
| XIST | autosomal recessive limb-girdle muscular dystrophy type 2B | MNDR Database |
| XIST | Barrett's adenocarcinoma | MNDR Database |
| XIST | bladder urothelial carcinoma | MNDR Database |
| XIST | bone disease | MNDR Database |
| XIST | brain disease | MNDR Database |
| XIST | breast cancer | MNDR Database |
| XIST | Breast Neoplasms | MNDR Database |
| XIST | Burkitt lymphoma | MNDR Database |
| XIST | cancer | MNDR Database |
| XIST | carcinoma | MNDR Database |
| XIST | Carcinoma, Ductal, Breast | MNDR Database |
| XIST | Carcinoma, Non-Small-Cell Lung | MNDR Database |
| XIST | Carcinoma, Renal Cell | MNDR Database |
| XIST | cervical squamous cell carcinoma | MNDR Database |
| XIST | cholangiocarcinoma | MNDR Database |
| XIST | chordoma | MNDR Database |
| XIST | chromophobe renal cell carcinoma | MNDR Database |
| XIST | colon adenocarcinoma | MNDR Database |
| XIST | colon cancer | MNDR Database |
| XIST | colorectal cancer | MNDR Database |
| XIST | connective tissue disease | MNDR Database |
| XIST | diabetes mellitus | MNDR Database |
| XIST | diffuse large B-cell lymphoma | MNDR Database |
| XIST | dilated cardiomyopathy | MNDR Database |
| XIST | Duke A | MNDR Database |
| XIST | Duke C | MNDR Database |
| XIST | embryonal cancer | MNDR Database |
| XIST | esophageal cancer | MNDR Database |
| XIST | esophageal carcinoma | MNDR Database |
| XIST | eye disease | MNDR Database |
| XIST | familiar ovarian carcinoma | MNDR Database |
| XIST | gastric adenocarcinoma | MNDR Database |
| XIST | gastrointestinal system cancer | MNDR Database |
| XIST | gastrointestinal system disease | MNDR Database |
| XIST | Glioblastoma | MNDR Database |
| XIST | head and neck cancer | MNDR Database |
| XIST | head and neck squamous cell carcinoma | MNDR Database |
| XIST | heart disease | MNDR Database |
| XIST | Heart Failure | MNDR Database |
| XIST | hepatocellular carcinoma | MNDR Database |
| XIST | Her2-receptor positive breast cancer | MNDR Database |
| XIST | Hodgkin's lymphoma | MNDR Database |
| XIST | hypersensitivity reaction type II disease | MNDR Database |
| XIST | hypertension | MNDR Database |
| XIST | intellectual disability | MNDR Database |
| XIST | intestinal disease | MNDR Database |
| XIST | intracranial aneurysm | MNDR Database |
| XIST | invasive ductal carcinoma | MNDR Database |
| XIST | kidney cancer | MNDR Database |
| XIST | kidney disease | MNDR Database |
| XIST | large cell carcinoma | MNDR Database |
| XIST | large cell neuroendocrine cancer | MNDR Database |
| XIST | leukemia | MNDR Database |
| XIST | lung adenocarcinoma | MNDR Database |
| XIST | lung cancer | MNDR Database |
| XIST | lung disease | MNDR Database |
| XIST | lung small cell carcinoma | MNDR Database |
| XIST | lung squamous cell carcinoma | MNDR Database |
| XIST | lupus erythematosus | MNDR Database |
| XIST | lymphoblastic leukemia | MNDR Database |
| XIST | lymphoma | MNDR Database |
| XIST | malignant glioma | MNDR Database |
| XIST | medulloblastoma | MNDR Database |
| XIST | melanoma | MNDR Database |
| XIST | meningioma | MNDR Database |
| XIST | Mesothelioma | MNDR Database |
| XIST | Multiple Sclerosis, Chronic Progressive | MNDR Database |
| XIST | muscular disease | MNDR Database |
| XIST | Muscular Disorders, Atrophic | MNDR Database |
| XIST | myopathy | MNDR Database |
| XIST | nasopharynx carcinoma | MNDR Database |
| XIST | Neoplasms | MNDR Database |
| XIST | nephroblastoma | MNDR Database |
| XIST | neuroblastoma | MNDR Database |
| XIST | neurodegenerative disease | MNDR Database |
| XIST | Neuroendocrine Tumors | MNDR Database |
| XIST | oral squamous cell carcinoma | MNDR Database |
| XIST | osteosarcoma | MNDR Database |
| XIST | Ovarian Neoplasms | MNDR Database |
| XIST | pancreatic adenocarcinoma | MNDR Database |
| XIST | pancreatic cancer | MNDR Database |
| XIST | Pancreatitis, Chronic | MNDR Database |
| XIST | papillary renal cell carcinoma | MNDR Database |
| XIST | Peripheral Nervous System Diseases | MNDR Database |
| XIST | pituitary adenoma | MNDR Database |
| XIST | progesterone-receptor negative breast cancer | MNDR Database |
| XIST | progesterone-receptor positive breast cancer | MNDR Database |
| XIST | prostate adenocarcinoma | MNDR Database |
| XIST | Prostatic Neoplasms | MNDR Database |
| XIST | rectum adenocarcinoma | MNDR Database |
| XIST | relapsing-remitting multiple sclerosis | MNDR Database |
| XIST | renal cell carcinoma | MNDR Database |
| XIST | renal clear cell carcinoma | MNDR Database |
| XIST | retinoblastoma | MNDR Database |
| XIST | sarcoma | MNDR Database |
| XIST | schizophrenia | MNDR Database |
| XIST | Seizures | MNDR Database |
| XIST | skin disease | MNDR Database |
| XIST | squamous cell carcinoma | MNDR Database |
| XIST | stomach cancer | MNDR Database |
| XIST | Stroke | MNDR Database |
| XIST | temporal lobe epilepsy | MNDR Database |
| XIST | testicular germ cell cancer | MNDR Database |
| XIST | thyroid cancer | MNDR Database |
| XIST | thyroid carcinoma | MNDR Database |
| XIST | urinary bladder cancer | MNDR Database |
| XIST | uterine corpus endometrial carcinoma | MNDR Database |
| XIST | Uterine Cervical Neoplasms | MNDR Database |
| XIST | vascular disease | MNDR Database |
| XIST | Alzheimer's disease | MNDR Database |
| XIST | B-cell acute lymphoblastic leukemia | LncRNADisease Database |
| XIST | bladder cancer | LncRNADisease Database |
| XIST | breast cancer | LncRNADisease Database |
| XIST | breast cancer | MNDR Database |
| XIST | cancer | LncRNADisease Database |
| XIST | cancer | MNDR Database |
| XIST | Carcinoma, Non-Small-Cell Lung | MNDR Database |
| XIST | collecting duct carcinoma | MNDR Database |
| XIST | colorectal cancer | MNDR Database |
| XIST | gastric cancer | LncRNADisease Database |
| XIST | glioblastoma | LncRNADisease Database |
| XIST | Glioblastoma | MNDR Database |
| XIST | hepatocellular carcinoma | LncRNADisease Database |
| XIST | hepatocellular carcinoma | MNDR Database |
| XIST | Huntington's disease | MNDR Database |
| XIST | Klinefelter's syndrome | LncRNADisease Database |
| XIST | Klinefelter's syndrome | MNDR Database |
| XIST | lung cancer | MNDR Database |
| XIST | lymphoma | MNDR Database |
| XIST | malignant glioma | MNDR Database |
| XIST | melanoma | MNDR Database |
| XIST | membranous nephropathy | LncRNADisease Database |
| XIST | nasopharyngeal carcinoma | LncRNADisease Database |
| XIST | nasopharynx carcinoma | MNDR Database |
| XIST | neuroblastoma | MNDR Database |
| XIST | neurodegenerative disease | MNDR Database |
| XIST | non-small cell lung cancer | LncRNADisease Database |
| XIST | ovarian cancer | LncRNADisease Database |
| XIST | Ovarian Neoplasms | MNDR Database |
| XIST | Precursor Cell Lymphoblastic Leukemia-Lymphoma | MNDR Database |
| XIST | Prostatic Neoplasms | MNDR Database |
| XIST | schizophrenia | MNDR Database |
| XIST | stomach cancer | MNDR Database |
| XIST | testicular cancer | LncRNADisease Database |
| XIST | testicular germ cell cancer | MNDR Database |
| XIST | thyroid cancer | MNDR Database |
| XIST | urinary bladder cancer | MNDR Database |
| XIST | Urinary Bladder Neoplasms | MNDR Database |
| XIST | Uterine Cervical Neoplasms | MNDR Database |
| XIST | x inactivation, familial skewed, 1 | eDGAR Database |