Control track and group visibility more selectively below.
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Umap... |
| Single-read and multi-read mappability by Umap |
Umap M100 |
| Multi-read mappability with 100-mers |
Umap M50 |
| Multi-read mappability with 50-mers |
Umap M24 |
| Multi-read mappability with 24-mers |
Umap M36 |
| Multi-read mappability with 36-mers |
Umap S100 |
| Single-read mappability with 100-mers |
Umap S36 |
| Single-read mappability with 36-mers |
Umap S50 |
| Single-read mappability with 50-mers |
Umap S24 |
| Single-read mappability with 24-mers |
Bismap... |
| Single-read and multi-read mappability after bisulfite conversion |
Bismap M24 |
| Multi-read mappability with 24-mers after bisulfite conversion |
Bismap M100 |
| Multi-read mappability with 100-mers after bisulfite conversion |
Bismap M36 |
| Multi-read mappability with 36-mers after bisulfite conversion |
Bismap M50 |
| Multi-read mappability with 50-mers after bisulfite conversion |
Bismap S24 - |
| Single-read mappability with 24-mers after bisulfite conversion (reverse strand) |
Bismap S100 + |
| Single-read mappability with 100-mers after bisulfite conversion (forward strand) |
Bismap S36 - |
| Single-read mappability with 36-mers after bisulfite conversion (reverse strand) |
Bismap S36 + |
| Single-read mappability with 36-mers after bisulfite conversion (forward strand) |
Bismap S24 + |
| Single-read mappability with 24-mers after bisulfite conversion (forward strand) |
Bismap S100 - |
| Single-read mappability with 100-mers after bisulfite conversion (reverse strand) |
Bismap S50 + |
| Single-read mappability with 50-mers after bisulfite conversion (forward strand) |
Bismap S50 - |
| Single-read mappability with 50-mers after bisulfite conversion (reverse strand) |
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Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
p12
Assembly |
| Assembly from Fragments |
p12
Chromosome Band |
| Chromosome Bands Localized by FISH Mapping Clones |
p12
Gap |
| Gap Locations |
Short Match |
| Perfect Matches to Short Sequence () |
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NCBI RefSeq |
| RefSeq gene predictions from NCBI |
Ribo-seq SmProt ATG |
| SmProt genes with ATG startcodon from ribosome profiling |
Ribo-seq SmProt non-ATG |
| SmProt genes with non-ATG startcodon from ribosome profiling |
Literature SmProt |
| SmProt genes from literature mining |
Database SmProt |
| SmProt genes from other databases |
MS SmProt |
| SmProt genes from mass spectrum |
NONCODE |
| Non-coding RNAs |
p12
All GENCODE... |
| All GENCODE transcripts, including comprehensive set and previous version |
All GENCODE V28 |
| All GENCODE annotations from V28 (Ensembl 92) |
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ClinVar variants |
| ClinVar variants |
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Conservation |
| Vertebrate Multiz Alignment & Conservation (100 Species) |
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Common SNPs(150) |
| Simple Nucleotide Polymorphisms (dbSNP 150) Found in >= 1% of Samples |
All SNPs(150) |
| Simple Nucleotide Polymorphisms (dbSNP 150) |
Flagged SNPs(150) |
| Simple Nucleotide Polymorphisms (dbSNP 150) Flagged by dbSNP as Clinically Assoc |
Mult. SNPs(150) |
| Simple Nucleotide Polymorphisms (dbSNP 150) That Map to Multiple Genomic Loci |
SmProt variants |
| Variants related to sORFs |
gnomAD Variants... |
| Genome Aggregation Database (gnomAD) Genome and Exome Variants |
gnomAD v3 |
| Genome Aggregation Database (gnomAD) Genome Variants v3 |
NyuWa variants |
| variants derived from NyuWa project |
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p12
RepeatMasker |
| Repeating Elements by RepeatMasker |
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