Schema for snp150CodingDbSnp
|
|
Database: hg38 Primary Table: snp150CodingDbSnp Row Count: 45,079,153   Data last updated: 2020-06-15
field | example | SQL type |
bin | 585 | smallint(6) |
chrom | chr1 | varchar(255) |
chromStart | 69091 | int(10) unsigned |
chromEnd | 69092 | int(10) unsigned |
name | rs985675606 | varchar(255) |
transcript | NM_001005484 | varchar(255) |
frame | 2 | enum('1', '2', '3', 'n/a') |
alleleCount | 2 | int(11) |
funcCodes | 8,42, | longblob |
alleles | T,C, | longblob |
codons | ATG,ACG, | longblob |
peptides | M,T, | longblob |
|
| |
|
|
Connected Tables and Joining Fields
|
|
Sample Rows
|
|
bin | chrom | chromStart | chromEnd | name | transcript | frame | alleleCount | funcCodes | alleles | codons | peptides |
---|
585 | chr1 | 69091 | 69092 | rs985675606 | NM_001005484 | 2 | 2 | 8,42, | T,C, | ATG,ACG, | M,T, |
585 | chr1 | 69115 | 69116 | rs757299236 | NM_001005484 | 2 | 2 | 8,42, | G,A, | GGT,GAT, | G,D, |
585 | chr1 | 69133 | 69134 | rs781394307 | NM_001005484 | 2 | 2 | 8,42, | A,G, | GAA,GGA, | E,G, |
585 | chr1 | 69217 | 69218 | rs746046455 | NM_001005484 | 2 | 2 | 8,42, | T,C, | GTA,GCA, | V,A, |
585 | chr1 | 69223 | 69224 | rs568964432 | NM_001005484 | 2 | 2 | 8,42, | A,T, | GAC,GTC, | D,V, |
585 | chr1 | 69240 | 69241 | rs768461588 | NM_001005484 | 1 | 2 | 8,42, | C,T, | CCC,TCC, | P,S, |
585 | chr1 | 69265 | 69266 | rs774179629 | NM_001005484 | 2 | 2 | 8,42, | T,A, | CTC,CAC, | L,H, |
585 | chr1 | 69269 | 69270 | rs201219564 | NM_001005484 | 3 | 2 | 8,3, | A,G, | TCA,TCG, | S,S, |
585 | chr1 | 69299 | 69300 | rs771968901 | NM_001005484 | 3 | 2 | 8,3, | A,C, | ACA,ACC, | T,T, |
585 | chr1 | 69334 | 69335 | rs773188222 | NM_001005484 | 2 | 2 | 8,42, | G,A, | CGC,CAC, | R,H, |
|
Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
| |
|
|
|