Schema for wgEncodeGencodeBasicV28 |
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Database: hg38 Primary Table: wgEncodeGencodeBasicV28 Row Count: 91,444 Data last updated: 2019-08-08
| field | example | SQL type | info |
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| bin | 585 | smallint(5) unsigned | range |
| name | ENST00000619216.1 | varchar(255) | values |
| chrom | chr1 | varchar(255) | values |
| strand | - | char(1) | values |
| txStart | 17368 | int(10) unsigned | range |
| txEnd | 17436 | int(10) unsigned | range |
| cdsStart | 17368 | int(10) unsigned | range |
| cdsEnd | 17368 | int(10) unsigned | range |
| exonCount | 1 | int(10) unsigned | range |
| exonStarts | 17368, | longblob | |
| exonEnds | 17436, | longblob | |
| score | 0 | int(11) | range |
| name2 | MIR6859-1 | varchar(255) | values |
| cdsStartStat | none | enum('none', 'unk', 'incmpl', 'cmpl') | values |
| cdsEndStat | none | enum('none', 'unk', 'incmpl', 'cmpl') | values |
| exonFrames | -1, | longblob | |
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Connected Tables and Joining Fields
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Sample Rows
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| bin | name | chrom | strand | txStart | txEnd | cdsStart | cdsEnd | exonCount | exonStarts | exonEnds | score | name2 | cdsStartStat | cdsEndStat | exonFrames |
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| 585 | ENST00000619216.1 | chr1 | - | 17368 | 17436 | 17368 | 17368 | 1 | 17368, | 17436, | 0 | MIR6859-1 | none | none | -1, |
| 585 | ENST00000473358.1 | chr1 | + | 29553 | 31097 | 29553 | 29553 | 3 | 29553,30563,30975, | 30039,30667,31097, | 0 | RP11-34P13.3 | none | none | -1,-1,-1, |
| 585 | ENST00000469289.1 | chr1 | + | 30266 | 31109 | 30266 | 30266 | 2 | 30266,30975, | 30667,31109, | 0 | RP11-34P13.3 | none | none | -1,-1, |
| 585 | ENST00000607096.1 | chr1 | + | 30365 | 30503 | 30365 | 30365 | 1 | 30365, | 30503, | 0 | MIR1302-2 | none | none | -1, |
| 585 | ENST00000417324.1 | chr1 | - | 34553 | 36081 | 34553 | 34553 | 3 | 34553,35276,35720, | 35174,35481,36081, | 0 | FAM138A | none | none | -1,-1,-1, |
| 585 | ENST00000641515.2 | chr1 | + | 65418 | 71585 | 65564 | 70008 | 3 | 65418,65519,69036, | 65433,65573,71585, | 0 | OR4F5 | cmpl | cmpl | -1,0,0, |
| 585 | ENST00000335137.4 | chr1 | + | 69054 | 70108 | 69090 | 70008 | 1 | 69054, | 70108, | 0 | OR4F5 | cmpl | cmpl | 0, |
| 585 | ENST00000466430.5 | chr1 | - | 89294 | 120932 | 89294 | 89294 | 4 | 89294,92090,112699,120774, | 91629,92240,112804,120932, | 0 | RP11-34P13.7 | none | none | -1,-1,-1,-1, |
| 585 | ENST00000495576.1 | chr1 | - | 89550 | 91105 | 89550 | 89550 | 2 | 89550,90286, | 90050,91105, | 0 | RP11-34P13.8 | none | none | -1,-1, |
| 73 | ENST00000610542.1 | chr1 | - | 120724 | 133723 | 120724 | 120724 | 4 | 120724,120873,129054,133373, | 120869,120932,129223,133723, | 0 | RP11-34P13.7 | none | none | -1,-1,-1,-1, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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