Schema for Ribo-seq SmProt nonATG - SmProt genes with non-ATG startcodon from Ribosome Profiling

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

Schema for Ribo-seq SmProt nonATG - SmProt genes with non-ATG startcodon from Ribosome Profiling

Database: mm10 Primary Table: smprot_ribo_MMU_nonATG Row Count: 180,245 Data last updated: 2020-08-13

field	example	SQL type	info
`bin`	608	`smallint(5) unsigned`	range
`chrom`	chr1	`varchar(255)`	values
`chromStart`	3102050	`int(10) unsigned`	range
`chromEnd`	3102116	`int(10) unsigned`	range
`name`	SPROMMU27724	`varchar(255)`	values
`score`	0	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`thickStart`	3102050	`int(10) unsigned`	range
`thickEnd`	3102116	`int(10) unsigned`	range
`reserved`	255	`int(10) unsigned`	range
`blockCount`	1	`int(10) unsigned`	range
`blockSizes`	66	`longblob`
`chromStarts`	0	`longblob`

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	thickStart	thickEnd	reserved	blockCount	blockSizes	chromStarts
608	chr1	3102050	3102116	SPROMMU27724	0	+	3102050	3102116	255	1	66	0
611	chr1	3531869	3531926	SPROMMU79044	0	+	3531869	3531926	255	1	57	0
611	chr1	3532006	3532300	SPROMMU168757	0	+	3532006	3532300	255	1	294	0
611	chr1	3532018	3532300	SPROMMU12923	0	+	3532018	3532300	255	1	282	0
611	chr1	3532030	3532300	SPROMMU182087	0	+	3532030	3532300	255	1	270	0
611	chr1	3532141	3532300	SPROMMU69879	0	+	3532141	3532300	255	1	159	0
611	chr1	3532195	3532300	SPROMMU146843	0	+	3532195	3532300	255	1	105	0
611	chr1	3532501	3532720	SPROMMU198326	0	+	3532501	3532720	255	1	219	0
617	chr1	4256395	4258991	SPROMMU187038	0	-	4256395	4258991	255	2	32,145	0,2451
617	chr1	4259666	4259732	SPROMMU165815	0	-	4259666	4259732	255	1	66	0

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.