Schema for Ribo-seq SmProt ATG - SmProt genes with ATG startcodon from Ribosome Profiling

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

Schema for Ribo-seq SmProt ATG - SmProt genes with ATG startcodon from Ribosome Profiling

Database: mm10 Primary Table: smprot_ribo_MMU_ATG Row Count: 62,191 Data last updated: 2020-08-13

field	example	SQL type	info
`bin`	611	`smallint(5) unsigned`	range
`chrom`	chr1	`varchar(255)`	values
`chromStart`	3531794	`int(10) unsigned`	range
`chromEnd`	3531926	`int(10) unsigned`	range
`name`	SPROMMU119660	`varchar(255)`	values
`score`	0	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`thickStart`	3531794	`int(10) unsigned`	range
`thickEnd`	3531926	`int(10) unsigned`	range
`reserved`	255	`int(10) unsigned`	range
`blockCount`	1	`int(10) unsigned`	range
`blockSizes`	132	`longblob`
`chromStarts`	0	`longblob`

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	thickStart	thickEnd	reserved	blockCount	blockSizes	chromStarts
611	chr1	3531794	3531926	SPROMMU119660	0	+	3531794	3531926	255	1	132	0
611	chr1	3532117	3532300	SPROMMU88380	0	+	3532117	3532300	255	1	183	0
611	chr1	3532468	3532720	SPROMMU129596	0	+	3532468	3532720	255	1	252	0
611	chr1	3532498	3532720	SPROMMU130655	0	+	3532498	3532720	255	1	222	0
611	chr1	3532534	3532720	SPROMMU134329	0	+	3532534	3532720	255	1	186	0
617	chr1	4256395	4259081	SPROMMU100382	0	-	4256395	4259081	255	2	32,235	0,2451
617	chr1	4259666	4259741	SPROMMU115887	0	-	4259666	4259741	255	1	75	0
619	chr1	4492465	4493181	SPROMMU132023	0	-	4492465	4493181	255	2	203,82	0,634
619	chr1	4492468	4493181	SPROMMU132022	0	-	4492468	4493181	255	2	200,82	0,631
619	chr1	4496517	4496721	SPROMMU132181	0	-	4496517	4496721	255	1	204	0

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.