Schema for NONCODE - non-coding RNAs

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Schema for NONCODE - non-coding RNAs

Database: mm10 Primary Table: smprot_NONCODE_mm10 Row Count: 219,471

field	example	SQL type	info
`bin`	608	`smallint(5) unsigned`	range
`chrom`	chr1	`varchar(255)`	values
`chromStart`	3062508	`int(10) unsigned`	range
`chromEnd`	3075172	`int(10) unsigned`	range
`name`	NONMMUG047864.1	`varchar(255)`	values
`score`	0	`int(10) unsigned`	range
`strand`	-	`char(1)`	values
`thickStart`	3062508	`int(10) unsigned`	range
`thickEnd`	3075172	`int(10) unsigned`	range
`reserved`	0	`int(10) unsigned`	range
`blockCount`	2	`int(10) unsigned`	range
`blockSizes`	562,317,	`longblob`
`chromStarts`	0,12347,	`longblob`

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	thickStart	thickEnd	reserved	blockCount	blockSizes	chromStarts
608	chr1	3062508	3075172	NONMMUG047864.1	0	-	3062508	3075172	0	2	562,317,	0,12347,
608	chr1	3062508	3075172	NONMMUT077193.1	0	-	3062508	3075172	0	2	562,317,	0,12347,
608	chr1	3072727	3074403	NONMMUG000001.2	0	+	3072727	3074403	0	2	38,1151,	0,525,
608	chr1	3072727	3074403	NONMMUT074964.1	0	+	3072727	3074403	0	2	38,225,	0,1451,
608	chr1	3073252	3074322	NONMMUT000001.2	0	+	3073252	3074322	0	1	1070,	0,
608	chr1	3116551	3117170	NONMMUG047865.1	0	-	3116551	3117170	0	1	619,	0,
608	chr1	3116551	3117170	NONMMUT077194.1	0	-	3116551	3117170	0	1	619,	0,
608	chr1	3117522	3119034	NONMMUG047866.1	0	-	3117522	3119034	0	1	1512,	0,
608	chr1	3117522	3119034	NONMMUT077195.1	0	-	3117522	3119034	0	1	1512,	0,
9	chr1	3125974	3188105	NONMMUG047867.1	0	-	3125974	3188105	0	2	753,15,	0,62116,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.