Schema for Ribo-seq SmProt non-ATG - SmProt genes with non-ATG startcodon from ribosome profiling

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Schema for Ribo-seq SmProt non-ATG - SmProt genes with non-ATG startcodon from ribosome profiling

Database: hg38 Primary Table: smprot_ribo_HSA_nonATG Row Count: 302,916 Data last updated: 2020-08-13

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr1	`varchar(255)`	values
`chromStart`	18362	`int(10) unsigned`	range
`chromEnd`	24838	`int(10) unsigned`	range
`name`	SPROHSA333081	`varchar(255)`	values
`score`	0	`int(10) unsigned`	range
`strand`	-	`char(1)`	values
`thickStart`	18362	`int(10) unsigned`	range
`thickEnd`	24838	`int(10) unsigned`	range
`reserved`	255	`int(10) unsigned`	range
`blockCount`	2	`int(10) unsigned`	range
`blockSizes`	4,101	`longblob`
`chromStarts`	0,6375	`longblob`

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	thickStart	thickEnd	reserved	blockCount	blockSizes	chromStarts
585	chr1	18362	24838	SPROHSA333081	0	-	18362	24838	255	2	4,101	0,6375
586	chr1	169203	172579	SPROHSA380728	0	-	169203	172579	255	2	61,23	0,3353
586	chr1	169203	173778	SPROHSA52302	0	-	169203	173778	255	3	61,132,26	0,3353,4549
586	chr1	185216	185500	SPROHSA79765	0	-	185216	185500	255	2	134,10	0,274
586	chr1	185216	186332	SPROHSA28123	0	-	185216	186332	255	3	134,69,16	0,274,1100
586	chr1	187393	187756	SPROHSA94198	0	-	187393	187756	255	2	184,2	0,361
586	chr1	187886	188459	SPROHSA284923	0	-	187886	188459	255	3	4,137,21	0,243,552
586	chr1	188256	188584	SPROHSA366118	0	-	188256	188584	255	2	10,146	0,182
586	chr1	188256	195273	SPROHSA134808	0	-	188256	195273	255	4	10,146,112,11	0,182,534,7006
586	chr1	188256	188901	SPROHSA131434	0	-	188256	188901	255	3	10,146,111	0,182,534

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.