Schema for Ribo-seq SmProt ATG - SmProt genes with ATG startcodon from ribosome profiling

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Schema for Ribo-seq SmProt ATG - SmProt genes with ATG startcodon from ribosome profiling

Database: hg38 Primary Table: smprot_ribo_HSA_ATG Row Count: 90,369 Data last updated: 2020-08-13

field	example	SQL type	info
`bin`	586	`smallint(5) unsigned`	range
`chrom`	chr1	`varchar(255)`	values
`chromStart`	169203	`int(10) unsigned`	range
`chromEnd`	173859	`int(10) unsigned`	range
`name`	SPROHSA159551	`varchar(255)`	values
`score`	0	`int(10) unsigned`	range
`strand`	-	`char(1)`	values
`thickStart`	169203	`int(10) unsigned`	range
`thickEnd`	173859	`int(10) unsigned`	range
`reserved`	255	`int(10) unsigned`	range
`blockCount`	3	`int(10) unsigned`	range
`blockSizes`	61,132,107	`longblob`
`chromStarts`	0,3353,4549	`longblob`

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	thickStart	thickEnd	reserved	blockCount	blockSizes	chromStarts
586	chr1	169203	173859	SPROHSA159551	0	-	169203	173859	255	3	61,132,107	0,3353,4549
586	chr1	185216	186365	SPROHSA142358	0	-	185216	186365	255	3	134,69,49	0,274,1100
589	chr1	629288	629432	SPROHSA144904	0	+	629288	629432	255	1	144	0
589	chr1	629747	629891	SPROHSA173901	0	+	629747	629891	255	1	144	0
589	chr1	631144	631222	SPROHSA153340	0	+	631144	631222	255	1	78	0
589	chr1	631346	631382	SPROHSA197877	0	+	631346	631382	255	1	36	0
589	chr1	631902	631938	SPROHSA157026	0	+	631902	631938	255	1	36	0
589	chr1	632420	632615	SPROHSA137965	0	+	632420	632615	255	1	195	0
589	chr1	632756	632951	SPROHSA191436	0	+	632756	632951	255	1	195	0
589	chr1	633372	633438	SPROHSA167634	0	+	633372	633438	255	1	66	0

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.